Factsheet for AT5G52040.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32603	Canola	nucleus	75.63	77.59
CDY38892	Canola	nucleus	83.19	73.88
GSMUA_Achr3P12360_001	Banana	nucleus	40.06	68.75
AT4G25500.4	Thale cress	nucleus	66.39	67.71
KRH65157	Soybean	nucleus	47.06	66.67
KRH48257	Soybean	nucleus	47.06	66.4
GSMUA_Achr1P03880_001	Banana	nucleus	44.54	66.25
Bra029146.1-P	Field mustard	nucleus	77.03	65.79
GSMUA_Achr5P10480_001	Banana	nucleus	44.54	65.7
Solyc01g091750.2.1	Tomato	nucleus	39.22	64.22
Os02t0122800-02	Rice	nucleus	49.3	63.08
GSMUA_Achr1P16190_001	Banana	nucleus	30.53	62.64
PGSC0003DMT400043937	Potato	nucleus	45.38	60.45
TraesCS6B01G088500.2	Wheat	nucleus	47.34	60.14
TraesCSU01G119700.2	Wheat	nucleus	47.06	59.79
TraesCS6A01G065400.2	Wheat	nucleus	47.06	59.57
EES06200	Sorghum	nucleus	46.78	56.61
AT3G61860.1	Thale cress	nucleus	40.62	54.92
KRH35377	Soybean	endoplasmic reticulum, nucleus	57.42	54.81
KRG91440	Soybean	nucleus	57.42	54.52
AT2G46610.1	Thale cress	nucleus	37.82	54.0
Solyc11g072340.1.1	Tomato	nucleus	52.66	53.11
VIT_15s0048g01870.t01	Wine grape	nucleus	48.18	52.12
Solyc03g026240.2.1	Tomato	nucleus	45.66	47.52
PGSC0003DMT400037012	Potato	nucleus	50.98	45.84
VIT_16s0100g00450.t01	Wine grape	nucleus	56.58	41.22

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	EntrezGene:835279	ProteinID:AED96162.1	ProteinID:AED96163.1	ProteinID:AED96164.1
ProteinID:AED96165.1	EMBL:AF370171	EMBL:AK319008	ProteinID:ANM68613.1	ArrayExpress:AT5G52040	EnsemblPlantsGene:AT5G52040
RefSeq:AT5G52040	TAIR:AT5G52040	RefSeq:AT5G52040-TAIR-G	EnsemblPlants:AT5G52040.2	TAIR:AT5G52040.2	Symbol:ATRSP41
EMBL:AY059133	Unigene:At.22278	ProteinID:BAB11052.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005681	GO:GO:0006139	GO:GO:0006397
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009987
GO:GO:0010445	GO:GO:0016607	GO:GO:0019538	GO:GO:0031053	GO:GO:0040029	InterPro:IPR000504
InterPro:IPR012677	RefSeq:NP_001154773.1	RefSeq:NP_001154774.1	RefSeq:NP_001330349.1	RefSeq:NP_200017.2	RefSeq:NP_851174.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084
PO:PO:0000230	PO:PO:0000293	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281
PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	Symbol:RS41
InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00001970C5	EMBL:X99436	SEG:seg

Description

ATRSP41RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G52040]

Coordinates

chr5:+:21130320..21133551

Molecular Weight (calculated)

41370.9 Da

IEP (calculated)

10.828

GRAVY (calculated)

-1.493

Length

357 amino acids

Sequence
(BLAST)

001: MKPVFCGNFE YDARESDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEY GRTGRRLRVE WTKNDRGGAG RSGGSRRSSS GLRPSKTLFV
101: INFDAQNTRT RDLERHFEPY GKIVNVRIRR NFAFIQYEAQ EDATRALDAT NSSKLMDKVI SVEYAVKDDD SRGNGYSPER RRDRSPDRRR RSPSPYRRER
201: GSPDYGRGAS PVAHKRERTS PDYGRGRRSP SPYKRARLSP DYKRDDRRRE RVASPENGAV RNRSPRKGRG ESRSPPPYEK RRESRSPPPY EKRRESRSPP
301: PYEKRRERSR SRSKSSPENG QVESPGQIME VEAGRGYDGA DSPIRESSPS RSPPAEE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.