Factsheet for VIT_15s0048g01870.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65157	Soybean	nucleus	60.3	78.97
KRH48257	Soybean	nucleus	60.3	78.66
Solyc01g091750.2.1	Tomato	nucleus	49.09	74.31
PGSC0003DMT400043937	Potato	nucleus	58.79	72.39
GSMUA_Achr3P12360_001	Banana	nucleus	45.15	71.63
GSMUA_Achr1P03880_001	Banana	nucleus	50.0	68.75
GSMUA_Achr5P10480_001	Banana	nucleus	50.0	68.18
GSMUA_Achr1P16190_001	Banana	nucleus	35.76	67.82
Os02t0122800-02	Rice	nucleus	50.61	59.86
TraesCS6A01G065400.2	Wheat	nucleus	50.3	58.87
TraesCSU01G119700.2	Wheat	nucleus	50.0	58.72
TraesCS6B01G088500.2	Wheat	nucleus	50.0	58.72
VIT_15s0046g00060.t01	Wine grape	endoplasmic reticulum	36.97	54.46
VIT_15s0046g00050.t01	Wine grape	nucleus	6.36	53.85
EES06200	Sorghum	nucleus	47.27	52.88
CDX89418	Canola	nucleus	50.3	49.11
Bra013895.1-P	Field mustard	nucleus	50.3	48.97
CDY57708	Canola	nucleus	50.0	48.67
CDY54084	Canola	nucleus	51.21	48.56
CDY52361	Canola	nucleus	51.21	48.56
Bra010459.1-P	Field mustard	nucleus	51.21	48.56
AT5G52040.2	Thale cress	nucleus	52.12	48.18
AT4G25500.4	Thale cress	nucleus	50.91	48.0
CDY32603	Canola	nucleus	50.0	47.41
CDY38892	Canola	nucleus	52.12	42.79
CDX92711	Canola	nucleus	39.7	42.53
Bra029146.1-P	Field mustard	nucleus	51.21	40.43
VIT_16s0100g00450.t01	Wine grape	nucleus	57.58	38.78

Protein Annotations

EntrezGene:100262670	wikigene:100262670	MapMan:16.4.6.3	Gene3D:3.30.70.330	ProteinID:CCB61339	ProteinID:CCB61339.1
UniProt:F6I322	EMBL:FN596739	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677
EntrezGene:LOC100262670	wikigene:LOC100262670	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257
PANTHER:PTHR44257:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928
TIGR:TC56715	UniParc:UPI00021088CD	ArrayExpress:VIT_15s0048g01870	EnsemblPlantsGene:VIT_15s0048g01870	EnsemblPlants:VIT_15s0048g01870.t01	unigene:Vvi.8933
RefSeq:XP_002273751	RefSeq:XP_002273751.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr15:+:16004435..16009685

Molecular Weight (calculated)

38756.7 Da

IEP (calculated)

10.820

GRAVY (calculated)

-1.105

Length

330 amino acids

Sequence
(BLAST)

001: MSKIRIMQTY FKITHLLKSY AVRYNLTQTN LYWIQIRKKR VGFLSHVADL QNPHSGVGRS AGKLQRIKRD CLVGNSRNMK PIFCGNLEYD ARQSDVERLF
101: RRYGKVDRVD LKSGFAFVYM DDERDAEDAI RRLDRTVFGR KGRQLRVEWT KQERGIRRPG GSRKSSANMK PSKTLFVINF DPIHTRTRDL ERHFDLYGKI
201: LNIRIRRNFA FIQFESQEDA TKALDATNMS KFMDRVISVE YAARDDDDDR RNGYSPERRG RDMSPDRRSH DRGRSPSPYH RDRASPDYGH GANANSRSEP
301: RGSPNYDRDE SPVNERYHSR SPPPRERSRS

Best Arabidopsis Sequence Match ( AT5G52040.2 )
(BLAST)

001: MKPVFCGNFE YDARESDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEY GRTGRRLRVE WTKNDRGGAG RSGGSRRSSS GLRPSKTLFV
101: INFDAQNTRT RDLERHFEPY GKIVNVRIRR NFAFIQYEAQ EDATRALDAT NSSKLMDKVI SVEYAVKDDD SRGNGYSPER RRDRSPDRRR RSPSPYRRER
201: GSPDYGRGAS PVAHKRERTS PDYGRGRRSP SPYKRARLSP DYKRDDRRRE RVASPENGAV RNRSPRKGRG ESRSPPPYEK RRESRSPPPY EKRRESRSPP
301: PYEKRRERSR SRSKSSPENG QVESPGQIME VEAGRGYDGA DSPIRESSPS RSPPAEE

Arabidopsis Description

ATRSP41RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G52040]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.