Factsheet for GSMUA_Achr5P10480_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P03880_001	Banana	nucleus	83.88	84.58
GSMUA_Achr3P12360_001	Banana	nucleus	59.92	69.71
GSMUA_Achr1P16190_001	Banana	nucleus	49.59	68.97
GSMUA_Achr11P...	Banana	nucleus	11.16	65.85
KRH65157	Soybean	nucleus	66.94	64.29
KRH48257	Soybean	nucleus	66.94	64.03
Solyc01g091750.2.1	Tomato	nucleus	56.61	62.84
PGSC0003DMT400043937	Potato	nucleus	64.88	58.58
Os02t0122800-02	Rice	nucleus	67.36	58.42
TraesCSU01G119700.2	Wheat	nucleus	66.12	56.94
TraesCS6A01G065400.2	Wheat	nucleus	66.12	56.74
TraesCS6B01G088500.2	Wheat	nucleus	65.29	56.23
GSMUA_Achr1P03990_001	Banana	nucleus	56.2	55.51
VIT_15s0048g01870.t01	Wine grape	nucleus	68.18	50.0
EES06200	Sorghum	nucleus	59.92	49.15
CDX89418	Canola	nucleus	64.05	45.86
Solyc11g072340.1.1	Tomato	nucleus	66.94	45.76
CDY57708	Canola	nucleus	64.05	45.72
Bra013895.1-P	Field mustard	nucleus	64.05	45.72
Solyc03g026240.2.1	Tomato	nucleus	64.05	45.19
KRG91440	Soybean	nucleus	69.83	44.95
KRH35377	Soybean	endoplasmic reticulum, nucleus	69.42	44.92
CDY32603	Canola	nucleus	64.05	44.54
AT5G52040.2	Thale cress	nucleus	65.7	44.54
AT4G25500.4	Thale cress	nucleus	63.64	44.0
CDY52361	Canola	nucleus	63.22	43.97
Bra010459.1-P	Field mustard	nucleus	63.22	43.97
CDY54084	Canola	nucleus	62.81	43.68
GSMUA_Achr11P...	Banana	extracellular, plastid	48.35	42.86
CDY38892	Canola	nucleus	65.29	39.3
CDX92711	Canola	nucleus	49.59	38.96
PGSC0003DMT400037012	Potato	nucleus	63.64	38.79
Bra029146.1-P	Field mustard	nucleus	64.88	37.56
VIT_16s0100g00450.t01	Wine grape	nucleus	69.83	34.49

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G10480_001	EnsemblPlants:GSMUA_Achr5P10480_001
EnsemblPlants:GSMUA_Achr5T10480_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0SXC7	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RSP31/31A/40/41
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002963A11	SEG:seg	:	:

Description

Arginine/serine-rich-splicing factor RSP40 [Source:GMGC_GENE;Acc:GSMUA_Achr5G10480_001]

Coordinates

chr5:+:7489309..7494041

Molecular Weight (calculated)

28023.5 Da

IEP (calculated)

10.581

GRAVY (calculated)

-1.191

Length

242 amino acids

Sequence
(BLAST)

001: MSRSIFCGNL DNDTRHSELE RLFSRYGKVD RVDMKSGFAF IYMDDERDAE DAIRGLDRLE FGRHGRRLRV EWTKAGNSRR SGSSRRPSAN TKPSKTLFVI
101: NFDSINTRTR DLERHFEPYG KILNVRIRRN FAFIQFDAQD DATKALEATH MSKLMDRVIS VEYAVRDDDD RRNGYSPDRR GRERSRSHDR GRSSSPYGRG
201: VERASPNYGR APSPYAKARE RGSPSYEKAQ SPADDRDRSR SP

Best Arabidopsis Sequence Match ( AT5G52040.2 )
(BLAST)

001: MKPVFCGNFE YDARESDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEY GRTGRRLRVE WTKNDRGGAG RSGGSRRSSS GLRPSKTLFV
101: INFDAQNTRT RDLERHFEPY GKIVNVRIRR NFAFIQYEAQ EDATRALDAT NSSKLMDKVI SVEYAVKDDD SRGNGYSPER RRDRSPDRRR RSPSPYRRER
201: GSPDYGRGAS PVAHKRERTS PDYGRGRRSP SPYKRARLSP DYKRDDRRRE RVASPENGAV RNRSPRKGRG ESRSPPPYEK RRESRSPPPY EKRRESRSPP
301: PYEKRRERSR SRSKSSPENG QVESPGQIME VEAGRGYDGA DSPIRESSPS RSPPAEE

Arabidopsis Description

ATRSP41RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G52040]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.