Factsheet for Bra010459.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52361	Canola	nucleus	100.0	100.0
CDY54084	Canola	nucleus	88.79	88.79
Bra013895.1-P	Field mustard	nucleus	83.91	86.14
AT4G25500.4	Thale cress	nucleus	83.05	82.57
GSMUA_Achr3P12360_001	Banana	nucleus	41.67	69.71
KRH65157	Soybean	nucleus	47.7	65.87
KRH48257	Soybean	nucleus	47.7	65.61
GSMUA_Achr1P03880_001	Banana	nucleus	44.83	65.0
Solyc01g091750.2.1	Tomato	nucleus	40.52	64.68
Os02t0122800-02	Rice	nucleus	50.86	63.44
GSMUA_Achr5P10480_001	Banana	nucleus	43.97	63.22
GSMUA_Achr1P16190_001	Banana	nucleus	30.46	60.92
TraesCS6B01G088500.2	Wheat	nucleus	48.85	60.5
TraesCSU01G119700.2	Wheat	nucleus	48.56	60.14
PGSC0003DMT400043937	Potato	nucleus	46.26	60.07
EES06200	Sorghum	nucleus	50.86	60.0
TraesCS6A01G065400.2	Wheat	nucleus	48.56	59.93
Bra029146.1-P	Field mustard	nucleus	68.97	57.42
KRH35377	Soybean	endoplasmic reticulum, nucleus	59.2	55.08
KRG91440	Soybean	nucleus	59.2	54.79
Solyc11g072340.1.1	Tomato	nucleus	54.02	53.11
VIT_15s0048g01870.t01	Wine grape	nucleus	48.56	51.21
Solyc03g026240.2.1	Tomato	nucleus	47.7	48.4
PGSC0003DMT400037012	Potato	nucleus	51.15	44.84
VIT_16s0100g00450.t01	Wine grape	nucleus	59.77	42.45

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra010459	EnsemblPlants:Bra010459.1	EnsemblPlants:Bra010459.1-P	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4D1V9	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RSP31/31A/40/41
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002545A39	SEG:seg	:	:

Description

AT4G25500 (E=9e-143) ATRSP35, ATRSP40, AT-SRP40, RSP35 | ATRSP35; RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA08:-:14620761..14622758

Molecular Weight (calculated)

40261.3 Da

IEP (calculated)

10.658

GRAVY (calculated)

-1.561

Length

348 amino acids

Sequence
(BLAST)

001: MKPVFCGNFE YDAREGDLER LFRKYGRVER VDMKAGFAFV YMEDERDAED AIRALDRIEF GRKGRRLRVE WTKGERGGDR RSGGGSRRSS SMRPSKTLFV
101: INFDADNTRT RDLERHFEPY GKIVNVRIRR NFAFVQYEEQ EDATRALDAT NNSKLMDKVI SVEYAMKDDD ARGNGHSPER RRDRSPERRR RSPSPYKRER
201: GSPDYGRGGS PVAAYKRERT SPDYGRRRSP SPYKRTRRSS PEYGRDRHRG NESPRRRERG ASPRYSRSPD NKRERVSPDR SPLKKESSQN GDGEVDSPNE
301: RRERSRSSPE NGQVESPGSI GRRDSDGGYD GADSPMQKSR SRSPPAEE

Best Arabidopsis Sequence Match ( AT4G25500.4 )
(BLAST)

001: MKPVFCGNFE YDAREGDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEF GRKGRRLRVE WTKSERGGDK RSGGGSRRSS SSMRPSKTLF
101: VINFDADNTR TRDLEKHFEP YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DARGNGHSPE RRRDRSPERR RRSPSPYKRE
201: RGSPDYGRGA SPVAAYRKER TSPDYGRRRS PSPYKKSRRG SPEYGRDRRG NDSPRRRERV ASPTKYSRSP NNKRERMSPN HSPFKKESPR NGVGEVESPI
301: ERRERSRSSP ENGQVESPGS IGRRDSDGGY DGAESPMQKS RSPRSPPADE

Arabidopsis Description

RS40Serine/arginine-rich splicing factor RS40 [Source:UniProtKB/Swiss-Prot;Acc:P92965]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.