Factsheet for GSMUA_Achr3P12360_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g091750.2.1	Tomato	nucleus	65.38	62.39
GSMUA_Achr1P03880_001	Banana	nucleus	70.19	60.83
GSMUA_Achr5P10480_001	Banana	nucleus	69.71	59.92
GSMUA_Achr1P16190_001	Banana	nucleus	45.67	54.6
KRH65157	Soybean	nucleus	65.87	54.37
KRH48257	Soybean	nucleus	65.38	53.75
Os02t0122800-02	Rice	nucleus	69.71	51.97
PGSC0003DMT400043937	Potato	nucleus	64.42	50.0
TraesCS6A01G065400.2	Wheat	nucleus	66.35	48.94
TraesCSU01G119700.2	Wheat	nucleus	65.87	48.75
TraesCS6B01G088500.2	Wheat	nucleus	65.38	48.4
EES06200	Sorghum	nucleus	65.87	46.44
GSMUA_Achr1P03990_001	Banana	nucleus	54.33	46.12
VIT_15s0048g01870.t01	Wine grape	nucleus	71.63	45.15
CDY57708	Canola	nucleus	70.19	43.07
CDX89418	Canola	nucleus	69.71	42.9
Bra013895.1-P	Field mustard	nucleus	69.71	42.77
GSMUA_Achr11P...	Banana	extracellular, plastid	55.77	42.49
CDY54084	Canola	nucleus	69.71	41.67
CDY52361	Canola	nucleus	69.71	41.67
Bra010459.1-P	Field mustard	nucleus	69.71	41.67
AT4G25500.4	Thale cress	nucleus	69.23	41.14
AT5G52040.2	Thale cress	nucleus	68.75	40.06
CDY32603	Canola	nucleus	66.35	39.66
Solyc03g026240.2.1	Tomato	nucleus	63.94	38.78
Solyc11g072340.1.1	Tomato	nucleus	65.87	38.7
KRG91440	Soybean	nucleus	69.23	38.3
KRH35377	Soybean	endoplasmic reticulum, nucleus	68.27	37.97
CDY38892	Canola	nucleus	69.23	35.82
PGSC0003DMT400037012	Potato	nucleus	64.9	34.01
Bra029146.1-P	Field mustard	nucleus	68.27	33.97
CDX92711	Canola	nucleus	49.04	33.12
VIT_16s0100g00450.t01	Wine grape	nucleus	71.63	30.41
GSMUA_Achr11P...	Banana	nucleus	0.48	2.44

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G12360_001	EnsemblPlants:GSMUA_Achr3P12360_001
EnsemblPlants:GSMUA_Achr3T12360_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0SE03	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RSP31/31A/40/41
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296B32C	SEG:seg	:	:

Description

Arginine/serine-rich-splicing factor RSP40 [Source:GMGC_GENE;Acc:GSMUA_Achr3G12360_001]

Coordinates

chr3:+:9144922..9148687

Molecular Weight (calculated)

24478.3 Da

IEP (calculated)

10.368

GRAVY (calculated)

-1.527

Length

208 amino acids

Sequence
(BLAST)

001: MDDERDAEDA IRALDRTEFG RQGRRLRVEW TKQERGGRSA SSRRSPSNMR PTKTLFVINF DPINTRMRDL ERHFEPYGKI SNVRIRRNFA FIHFELQEDA
101: TKALEATNMS KLMDRVISVE YALRDDDDKR NGYSPDRRGR ERSLERRGRD TRRSPSPYGR GRERDSPDYG RGPSPYNKPE QRGSPNYGRD GSPGYERYPS
201: QSPRQEEQ

Best Arabidopsis Sequence Match ( AT4G25500.3 )
(BLAST)

001: MQGFAFVYME DERDAEDAIR ALDRFEFGRK GRRLRVEWTK SERGGDKRSG GGSRRSSSSM RPSKTLFVIN FDADNTRTRD LEKHFEPYGK IVNVRIRRNF
101: AFIQYEAQED ATRALDASNN SKLMDKVISV EYAVKDDDAR GNGHSPERRR DRSPERRRRS PSPYKRERGS PDYGRGASPV AAYRKERTSP DYGRRRSPSP
201: YKKSRRGSPE YGRDRRGNDS PRRRERVASP TKYSRSPNNK RERMSPNHSP FKKESPRNGV GEVESPIERR ERSRSSPENG QVESPGSIGR RDSDGGYDGA
301: ESPMQKSRSP RSPPADE

Arabidopsis Description

RS40Serine/arginine-rich splicing factor RS40 [Source:UniProtKB/Swiss-Prot;Acc:P92965]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.