Factsheet for Solyc11g072340.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P03880_001	Banana	nucleus	45.48	67.08
GSMUA_Achr5P10480_001	Banana	nucleus	45.76	66.94
GSMUA_Achr3P12360_001	Banana	nucleus	38.7	65.87
Solyc01g091750.2.1	Tomato	nucleus	40.4	65.6
GSMUA_Achr1P16190_001	Banana	nucleus	31.92	64.94
TraesCSU01G119700.2	Wheat	nucleus	48.87	61.57
TraesCS6B01G088500.2	Wheat	nucleus	48.87	61.57
TraesCS6A01G065400.2	Wheat	nucleus	48.87	61.35
Os02t0122800-02	Rice	nucleus	47.74	60.57
CDX89418	Canola	nucleus	52.82	55.33
Solyc10g009330.2.1	Tomato	nucleus	32.2	55.07
CDY57708	Canola	nucleus	51.98	54.28
CDY52361	Canola	nucleus	53.11	54.02
Bra010459.1-P	Field mustard	nucleus	53.11	54.02
Bra013895.1-P	Field mustard	nucleus	51.69	53.98
CDY32603	Canola	nucleus	52.26	53.16
CDY54084	Canola	nucleus	51.98	52.87
AT5G52040.2	Thale cress	nucleus	53.11	52.66
Solyc01g096180.2.1	Tomato	nucleus	36.44	52.65
Solyc03g026240.2.1	Tomato	nucleus	50.56	52.19
EES06200	Sorghum	nucleus	42.94	51.53
AT4G25500.4	Thale cress	nucleus	50.0	50.57
KRH35377	Soybean	endoplasmic reticulum, nucleus	53.39	50.53
KRG91440	Soybean	nucleus	53.11	50.0
CDY38892	Canola	nucleus	55.08	48.51
Bra029146.1-P	Field mustard	nucleus	53.39	45.22
CDX92711	Canola	nucleus	37.85	43.51
VIT_16s0100g00450.t01	Wine grape	nucleus	57.63	41.63

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677
UniProt:K4DAU1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF4
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc11g072340.1
EnsemblPlants:Solyc11g072340.1.1	UniParc:UPI0002769B25	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:55549837..55552648

Molecular Weight (calculated)

40961.4 Da

IEP (calculated)

10.850

GRAVY (calculated)

-1.480

Length

354 amino acids

Sequence
(BLAST)

001: MRPIFCGNVE YNARQSELER LFRRYGRVDR VDMKSGFAFV YMDDERDAED AIRGLDRIEF GRKGRRLRIE WSKEERNGRR PETSRKSSSS VKPSKTLFVI
101: NFDPYSTRSR DIERHFDPYG KILNIRIRRN FAFVQYETQE DATRALDATN MSKLMDQVIT VEYANKDDDD RRNGFSPDRN RDRGLKRGYD RGRSRSPYGR
201: ERGSPDYGRG RARSPSPIRQ GRSSPDYGRR PSPNPNHRER DSEYGSGRSP NMRKERNPDH GNGHSPNPRR LRAGSENGEV HSPPEEGLLE SGPSPPRVGR
301: RGKYSPDDYR GRSRSPSPRS KPEEIGSPRY GAAESPLPER HRSLSPPTRE RSRS

Best Arabidopsis Sequence Match ( AT4G25500.4 )
(BLAST)

001: MKPVFCGNFE YDAREGDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEF GRKGRRLRVE WTKSERGGDK RSGGGSRRSS SSMRPSKTLF
101: VINFDADNTR TRDLEKHFEP YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DARGNGHSPE RRRDRSPERR RRSPSPYKRE
201: RGSPDYGRGA SPVAAYRKER TSPDYGRRRS PSPYKKSRRG SPEYGRDRRG NDSPRRRERV ASPTKYSRSP NNKRERMSPN HSPFKKESPR NGVGEVESPI
301: ERRERSRSSP ENGQVESPGS IGRRDSDGGY DGAESPMQKS RSPRSPPADE

Arabidopsis Description

RS40Serine/arginine-rich splicing factor RS40 [Source:UniProtKB/Swiss-Prot;Acc:P92965]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.