CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G52040.2	Thale cress	nucleus	77.59	75.63
CDY38892	Canola	nucleus	86.21	74.63
Bra029146.1-P	Field mustard	nucleus	83.62	69.62
CDX89418	Canola	nucleus	66.67	68.64
CDY57708	Canola	nucleus	66.09	67.85
CDY54084	Canola	nucleus	66.67	66.67
GSMUA_Achr3P12360_001	Banana	nucleus	39.66	66.35
CDY52361	Canola	nucleus	66.09	66.09
GSMUA_Achr1P03880_001	Banana	nucleus	45.11	65.42
KRH48257	Soybean	nucleus	47.41	65.22
KRH65157	Soybean	nucleus	47.13	65.08
GSMUA_Achr5P10480_001	Banana	nucleus	44.54	64.05
Solyc01g091750.2.1	Tomato	nucleus	38.22	61.01
GSMUA_Achr1P16190_001	Banana	nucleus	30.17	60.34
Os02t0122800-02	Rice	nucleus	48.28	60.22
PGSC0003DMT400043937	Potato	nucleus	45.11	58.58
TraesCS6B01G088500.2	Wheat	nucleus	47.13	58.36
TraesCSU01G119700.2	Wheat	nucleus	46.84	58.01
TraesCS6A01G065400.2	Wheat	nucleus	46.84	57.8
EES06200	Sorghum	nucleus	45.4	53.56
KRH35377	Soybean	endoplasmic reticulum, nucleus	57.18	53.21
KRG91440	Soybean	nucleus	57.18	52.93
Solyc11g072340.1.1	Tomato	nucleus	53.16	52.26
CDX92711	Canola	nucleus	44.83	50.65
VIT_15s0048g01870.t01	Wine grape	nucleus	47.41	50.0
Solyc03g026240.2.1	Tomato	nucleus	45.98	46.65
PGSC0003DMT400037012	Potato	nucleus	50.57	44.33
VIT_16s0100g00450.t01	Wine grape	nucleus	57.18	40.61
CDX81436	Canola	cytosol	7.76	38.57
CDY22958	Canola	cytosol	7.47	37.14
CDX71702	Canola	endoplasmic reticulum, extracellular, nucleus	27.87	35.14

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:A0A078H714	UniProt:A0A078H714	EnsemblPlants:CDY32603	ProteinID:CDY32603
ProteinID:CDY32603.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00052628001	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE4BD0	SEG:seg

Description

BnaC03g15710DBnaC03g15710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H714]

Coordinates

chrLK032297:-:178694..181146

Molecular Weight (calculated)

41100.3 Da

IEP (calculated)

10.274

GRAVY (calculated)

-1.619

Length

348 amino acids

Sequence
(BLAST)

001: MRPVFCGNFE YDAREGDLER LFRRYGKVDR VDMKAGFAFV YMENERDAED AIRALDRYEY GRKGRRLRVE WTKNERGAPT RSSGSRRSSS LRPSKTLFVI
101: NFDAESTRTR DLERHFEPYG KIVNVRIRRN FAFIQYELQE DATRALDATN SSNLMDKVIS VEYAMKDDDA RGNGYSPERR RDRSPDRRRR SPSPYRRERG
201: SPDYGRGRRS PSPYRRARVS PDYKRDDRRR ERVDSPDYKR DDRMREKEAS PDYKRDDRRR EKEASPENGA VRDRSPRNGR GESRSPPPYE KRRERERERE
301: RSRSKSSPEN GQVESPGPIM EEEEAGRGYD GADSPIRESH SRSPPAEE

Best Arabidopsis Sequence Match ( AT5G52040.1 )
(BLAST)

001: MKPVFCGNFE YDARESDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEY GRTGRRLRVE WTKNDRGGAG RSGGSRRSSS GLRPSKTLFV
101: INFDAQNTRT RDLERHFEPY GKIVNVRIRR NFAFIQYEAQ EDATRALDAT NSSKLMDKVI SVEYAVKDDD SRGNGYSPER RRDRSPDRRR RSPSPYRRER
201: GSPDYGRGAS PVAHKRERTS PDYGRGRRSP SPYKRARLSP DYKRDDRRRE RVASPENGAV RNRSPRKGRG ESRSPPPYEK RRESRSPPPY EKRRESRSPP
301: PYEKRRERSR SRSKSSPENG QVESPGQIME VEAGRGYDGA DSPIRESPSR SPPAEE

Arabidopsis Description

ATRSP41RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G52040]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.