CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0122800-02	Rice	nucleus	68.47	72.4
TraesCS6A01G065400.2	Wheat	nucleus	66.44	69.5
TraesCSU01G119700.2	Wheat	nucleus	65.76	69.04
TraesCS6B01G088500.2	Wheat	nucleus	65.42	68.68
GSMUA_Achr3P12360_001	Banana	nucleus	46.44	65.87
KRH65157	Soybean	nucleus	54.24	63.49
KRH48257	Soybean	nucleus	54.24	63.24
GSMUA_Achr1P03880_001	Banana	nucleus	51.19	62.92
GSMUA_Achr5P10480_001	Banana	nucleus	49.15	59.92
Solyc01g091750.2.1	Tomato	nucleus	44.07	59.63
GSMUA_Achr1P16190_001	Banana	nucleus	34.92	59.2
PGSC0003DMT400043937	Potato	nucleus	51.53	56.72
EES11769	Sorghum	nucleus	44.41	55.04
CDY52361	Canola	nucleus	60.0	50.86
Bra010459.1-P	Field mustard	nucleus	60.0	50.86
CDY54084	Canola	nucleus	59.66	50.57
CDX89418	Canola	nucleus	56.61	49.41
CDY57708	Canola	nucleus	56.61	49.26
Bra013895.1-P	Field mustard	nucleus	56.61	49.26
EER92984	Sorghum	nucleus	42.71	47.37
VIT_15s0048g01870.t01	Wine grape	nucleus	52.88	47.27
AT5G52040.2	Thale cress	nucleus	56.61	46.78
AT4G25500.4	Thale cress	nucleus	54.58	46.0
CDY32603	Canola	nucleus	53.56	45.4
Solyc03g026240.2.1	Tomato	nucleus	50.51	43.44
Solyc11g072340.1.1	Tomato	nucleus	51.53	42.94
KRH35377	Soybean	endoplasmic reticulum, nucleus	52.54	41.44
KRG91440	Soybean	nucleus	52.54	41.22
CDY38892	Canola	nucleus	55.59	40.8
CDX92711	Canola	nucleus	41.69	39.94
Bra029146.1-P	Field mustard	nucleus	55.93	39.47
PGSC0003DMT400037012	Potato	nucleus	51.86	38.54
VIT_16s0100g00450.t01	Wine grape	nucleus	58.64	35.31

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	EntrezGene:8055045	UniProt:C5XT29	EnsemblPlants:EES06200	ProteinID:EES06200
ProteinID:EES06200.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	EMBL:KC425047
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RSP31/31A/40/41	SMART:SM00360	EnsemblPlantsGene:SORBI_3004G020700	SUPFAM:SSF54928	unigene:Sbi.6287
UniParc:UPI0001A85F19	RefSeq:XP_002453224.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:1612640..1616324

Molecular Weight (calculated)

33785.9 Da

IEP (calculated)

10.608

GRAVY (calculated)

-1.407

Length

295 amino acids

Sequence
(BLAST)

001: MRPVFCGNLD YDVRISEVER LFGKYGRVER VDLKTGFAFV YMEDERDAED AIHRLDGIDF GRKGRRIRVE WTKEDRTAGR RGSSRRSPTQ ARPTKTLFVI
101: NFDPINTRIR DLERHFDKYG RVANVRIKKN FAFVQFEVQE DATRALEGTN GSHFMDRVIS VEYALRDDDE KGERGNGYSP DRRGRERSPG RRRSPSPYGR
201: GRERGSPDYG RSKERGSPDY GRGGRSPDNG RGGHSPENGR GVSPANGGRG DHGRGGRSPD YDRERREASP RRERREASPG YDRSPSRSPG RDERD

Best Arabidopsis Sequence Match ( AT5G52040.2 )
(BLAST)

001: MKPVFCGNFE YDARESDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEY GRTGRRLRVE WTKNDRGGAG RSGGSRRSSS GLRPSKTLFV
101: INFDAQNTRT RDLERHFEPY GKIVNVRIRR NFAFIQYEAQ EDATRALDAT NSSKLMDKVI SVEYAVKDDD SRGNGYSPER RRDRSPDRRR RSPSPYRRER
201: GSPDYGRGAS PVAHKRERTS PDYGRGRRSP SPYKRARLSP DYKRDDRRRE RVASPENGAV RNRSPRKGRG ESRSPPPYEK RRESRSPPPY EKRRESRSPP
301: PYEKRRERSR SRSKSSPENG QVESPGQIME VEAGRGYDGA DSPIRESSPS RSPPAEE

Arabidopsis Description

ATRSP41RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G52040]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.