CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88795
EER92211
EER94870
EER97037
EER97602
EES10309
EES16196
KXG21829
KXG32406

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61860.1	EER94870	AT1G09140.1	21798944
AT3G61860.1	KXG21829	AT1G09140.1	21798944
AT3G61860.1	KXG32406	AT1G09140.1	21798944
AT3G61860.1	EER88795	AT1G53720.1	16497658
AT3G61860.1	EER97037	AT2G43370.1	15987817
AT3G61860.1	EER92211	AT3G13570.1	18674533
AT3G61860.1	EER97602	AT3G13570.1	18674533
AT3G61860.1	EES10309	AT3G55460.1	18674533
AT3G61860.1	EES16196	AT3G55460.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048505_P001	Maize	nucleus	75.94	79.22
HORVU4Hr1G088790.4	Barley	nucleus	67.29	64.62
TraesCS4B01G398900.1	Wheat	nucleus	66.17	64.47
TraesCSU01G114200.1	Wheat	nucleus	64.66	63.7
TraesCS5A01G555800.1	Wheat	nucleus	64.29	63.33
VIT_15s0046g00050.t01	Wine grape	nucleus	9.02	61.54
GSMUA_Achr11P...	Banana	nucleus	9.4	60.98
Solyc01g096180.2.1	Tomato	nucleus	53.01	57.55
PGSC0003DMT400000674	Potato	nucleus	51.5	57.08
Solyc10g009330.2.1	Tomato	nucleus	43.23	55.56
AT3G61860.1	Thale cress	nucleus	54.89	55.3
PGSC0003DMT400048580	Potato	extracellular, nucleus	51.88	54.76
EES11769	Sorghum	nucleus	48.5	54.2
AT2G46610.1	Thale cress	nucleus	50.75	54.0
KRH47859	Soybean	nucleus	50.75	52.12
KRH06424	Soybean	nucleus	50.75	51.14
EES06200	Sorghum	nucleus	47.37	42.71
CDY22958	Canola	cytosol	9.4	35.71
CDX81436	Canola	cytosol	9.4	35.71
CDX71702	Canola	endoplasmic reticulum, extracellular, nucleus	35.71	34.42

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	EntrezGene:8059482	UniProt:C5X118	EnsemblPlants:EER92984	ProteinID:EER92984
ProteinID:EER92984.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RSP31/31A/40/41	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G532800	SUPFAM:SSF54928	UniParc:UPI0001A8266C	RefSeq:XP_002465986.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:79622096..79627742

Molecular Weight (calculated)

31939.9 Da

IEP (calculated)

9.715

GRAVY (calculated)

-1.295

Length

266 amino acids

Sequence
(BLAST)

001: MRPVFCGNFD HDTRQYDLER LFSKYGSISR IDMKTGYAFI YFEDERDAED AIRRLDNVSF GYDRRKLSVE WSRQVEPVPK SRDRPTGDVK PTRTLFVINF
101: DPMRTKVQDI ERHFEPYGKI ANIRIRRNFA FVQYETQEEA SAAVKNTDKS TILDRVVTVE YAFRDDDSER DDRYGSPKRG AYDRRRGNPY LRSPSPRYRR
201: EYSPDYDRRG RYPGYDRRDG AMYERRSPVY DRYNRGRSPV YDRYNRGRSP VYDGYDRRGS PGYDQY

Best Arabidopsis Sequence Match ( AT3G61860.1 )
(BLAST)

001: MRPVFVGNFE YETRQSDLER LFDKYGRVDR VDMKSGYAFV YFEDERDAED AIRKLDNFPF GYEKRRLSVE WAKGERGRPR GDAKAPSNLK PTKTLFVINF
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP

Arabidopsis Description

RS31RSP31 [Source:UniProtKB/TrEMBL;Acc:A0A178VG60]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.