Factsheet for PGSC0003DMT400048580

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010908
PGSC0003DMT400011164
PGSC0003DMT400011166
PGSC0003DMT400055636
PGSC0003DMT400056014
PGSC0003DMT400063701
PGSC0003DMT400069100
PGSC0003DMT400081835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61860.1	PGSC0003DMT400063701	AT1G09140.1	21798944
AT3G61860.1	PGSC0003DMT400011164	AT1G53720.1	16497658
AT3G61860.1	PGSC0003DMT400011166	AT1G53720.1	16497658
AT3G61860.1	PGSC0003DMT400056014	AT1G53720.1	16497658
AT3G61860.1	PGSC0003DMT400069100	AT1G53720.1	16497658
AT3G61860.1	PGSC0003DMT400055636	AT2G43370.1	15987817
AT3G61860.1	PGSC0003DMT400010908	AT3G13570.1	18674533
AT3G61860.1	PGSC0003DMT400081835	AT3G13570.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g009330.2.1	Tomato	nucleus	81.35	99.03
PGSC0003DMT400000674	Potato	nucleus	69.44	72.92
KRH47859	Soybean	nucleus	72.22	70.27
VIT_15s0046g00060.t01	Wine grape	endoplasmic reticulum	60.32	67.86
KRH06424	Soybean	nucleus	71.03	67.8
AT3G61860.1	Thale cress	nucleus	65.87	62.88
AT2G46610.1	Thale cress	nucleus	61.9	62.4
EES11769	Sorghum	nucleus	56.75	60.08
Os04t0118900-01	Rice	nucleus	57.54	59.18
HORVU3Hr1G039480.2	Barley	cytosol, nucleus	14.29	59.02
TraesCS2A01G009400.2	Wheat	nucleus	56.75	58.37
TraesCS2D01G010300.1	Wheat	nucleus	55.95	55.73
PGSC0003DMT400043937	Potato	nucleus	55.56	52.24
EER92984	Sorghum	nucleus	54.76	51.88
GSMUA_Achr11P...	Banana	extracellular, plastid	55.95	51.65
TraesCS5A01G555800.1	Wheat	nucleus	54.76	51.11
TraesCS4B01G398900.1	Wheat	nucleus	55.16	50.92
TraesCSU01G114200.1	Wheat	nucleus	52.78	49.26
HORVU4Hr1G088790.4	Barley	nucleus	53.17	48.38
CDY22958	Canola	cytosol	12.3	44.29
CDX81436	Canola	cytosol	12.3	44.29
PGSC0003DMT400037012	Potato	nucleus	54.37	34.51
Zm00001d004425_P001	Maize	cytosol	16.67	34.43

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677
UniProt:M1BMM1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400018875	PGSC:PGSC0003DMG400018875	EnsemblPlants:PGSC0003DMT400048580
PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF3	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RS31
InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295633F	SEG:seg	:

Description

Arginine/serine-rich splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400018875]

Coordinates

chr10:+:5181190..5183999

Molecular Weight (calculated)

29987.3 Da

IEP (calculated)

10.344

GRAVY (calculated)

-1.091

Length

252 amino acids

Sequence
(BLAST)

001: MVLFGFCQVL LEVKMRPIFV GNFEFDTRQS ELERFFSKYG RIERVDMKSG YAFVYFEDER DAADAIRGTD NMPFGYERRR LSVEWAKGER GRHHDGPKSG
101: GNQRPTKTLF VINFDPIRTR VRDIEKHFEP HGKVLHVRIR RNFAFVQFEN QEEATRALEC THMSKVLDRV VSVEYALKDD DERGDKYNSP RRDYGRQRDS
201: PYRRSPSPVY RRNRPSPDYG RPRSPVHNGP SYDRYRSPQY GRYRSRSPVR RS

Best Arabidopsis Sequence Match ( AT3G61860.1 )
(BLAST)

001: MRPVFVGNFE YETRQSDLER LFDKYGRVDR VDMKSGYAFV YFEDERDAED AIRKLDNFPF GYEKRRLSVE WAKGERGRPR GDAKAPSNLK PTKTLFVINF
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP

Arabidopsis Description

RS31RSP31 [Source:UniProtKB/TrEMBL;Acc:A0A178VG60]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.