Factsheet for PGSC0003DMT400069100

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000674
PGSC0003DMT400009249
PGSC0003DMT400010908
PGSC0003DMT400032709
PGSC0003DMT400048580
PGSC0003DMT400060435
PGSC0003DMT400061471
PGSC0003DMT400063701
PGSC0003DMT400071859
PGSC0003DMT400079640
PGSC0003DMT400081835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53720.1	PGSC0003DMT400063701	AT1G09140.1	16497658
AT1G53720.1	PGSC0003DMT400060435	AT2G37340.1	16497658
AT1G53720.1	PGSC0003DMT400061471	AT2G37340.1	16497658
AT1G53720.1	PGSC0003DMT400010908	AT3G13570.1	16497658
AT1G53720.1	PGSC0003DMT400081835	AT3G13570.1	16497658
AT1G53720.1	PGSC0003DMT400000674	AT3G61860.1	16497658
AT1G53720.1	PGSC0003DMT400048580	AT3G61860.1	16497658
AT1G53720.1	PGSC0003DMT400009249	AT4G35800.1	16497658
AT1G53720.1	PGSC0003DMT400071859	AT5G62190.1	16497658
AT1G53720.1	PGSC0003DMT400079640	AT5G62190.1	16497658
AT1G53720.1	PGSC0003DMT400032709	AT5G64200.2	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056014	Potato	cytosol	50.44	96.11
PGSC0003DMT400011166	Potato	nucleus	66.47	78.08
Solyc12g038000.1.1	Tomato	nucleus	41.4	66.36
PGSC0003DMT400011164	Potato	cytosol	34.69	64.32
HORVU6Hr1G042040.1	Barley	endoplasmic reticulum	30.03	50.0
HORVU1Hr1G040970.1	Barley	cytosol, endoplasmic reticulum, mitochondrion	34.99	49.79
HORVU1Hr1G015670.5	Barley	cytosol	34.11	48.35
PGSC0003DMT400043897	Potato	cytoskeleton, cytosol, nucleus	23.91	42.49
AT1G53720.1	Thale cress	nucleus	62.39	42.29
TraesCS3D01G065600.1	Wheat	cytosol	40.52	41.62
Zm00001d036620_P001	Maize	nucleus	53.06	40.72
TraesCS3A01G064900.1	Wheat	cytosol	46.36	39.26
Bra030819.1-P	Field mustard	cytosol	61.52	38.79
TraesCS4A01G064400.1	Wheat	nucleus	53.94	38.7
TraesCS4D01G241400.1	Wheat	nucleus	54.23	38.67
TraesCS4B01G241800.1	Wheat	nucleus	51.9	38.2
GSMUA_Achr10P...	Banana	cytosol	57.73	35.74
Os06t0670500-01	Rice	cytosol	58.6	35.64
TraesCS7D01G457200.1	Wheat	nucleus	58.02	35.6
HORVU7Hr1G107520.5	Barley	nucleus	57.73	35.42
TraesCS7B01G371900.1	Wheat	nucleus	57.73	35.42
EER88795	Sorghum	cytosol	57.73	35.42
TraesCS7A01G469800.1	Wheat	nucleus	57.73	35.42
KRH13056	Soybean	nucleus	65.31	35.39
VIT_19s0027g01660.t01	Wine grape	nucleus	65.31	35.11
KRG93223	Soybean	nucleus	65.31	35.0
Os06t0670400-00	Rice	cytosol	47.23	34.54
PGSC0003DMT400022853	Potato	cytosol	15.16	31.71
PGSC0003DMT400038471	Potato	cytosol	14.29	30.62
CDY10512	Canola	nucleus	61.52	21.27
CDY72459	Canola	cytosol, extracellular, plastid	4.96	14.53
PGSC0003DMT400055240	Potato	cytosol	17.2	9.9
PGSC0003DMT400072698	Potato	mitochondrion, plastid	5.83	8.7
PGSC0003DMT400009946	Potato	mitochondrion	5.54	8.05
PGSC0003DMT400019171	Potato	cytosol	13.7	7.57

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.70.330	InterPro:CRIP	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016853	GO:GO:0019538	InterPro:IPR000504	InterPro:IPR002130	InterPro:IPR012677	InterPro:IPR029000
UniProt:M1CJX3	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00160	EnsemblPlantsGene:PGSC0003DMG400026878	PGSC:PGSC0003DMG400026878
EnsemblPlants:PGSC0003DMT400069100	PFscan:PS50072	PFscan:PS50102	PANTHER:PTHR11071	PANTHER:PTHR11071:SF156	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF50891	SUPFAM:SSF54928	UniParc:UPI0002954320	SEG:seg

Description

Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400026878]

Coordinates

chr00:+:23025359..23026390

Molecular Weight (calculated)

39016.1 Da

IEP (calculated)

4.537

GRAVY (calculated)

-0.689

Length

343 amino acids

Sequence
(BLAST)

001: MQTGDPTGTG FGGDSIYKFL YGDQARFFGD EIHSDLKHSK RGTVAMASAG TGTGTGEKNL NASQFYITLR DDLDSLDGEH TVFGEITEGF DTLNRINKAY
101: VDDKGKPYQN IRIKHTYILY DRFDDPSQLA DLIPDASPER KPKDEIDDDV RLEDDWMPKD EELGVREEKE AHFRAVILES VGDIPDAEMN PPYNVLFVCK
201: LKPSTEEKAL YIILSCFATV TSAEIIRDHK NGDSHCYAFI EFKDKESSEQ AYFKLDNTQI DERRIRVDFS QSVAKLWSDY LPRNQRGSVR FNNGSVETIK
301: QQKEENKQHG VDVIRAYAFW CFDDLLTSAG TWSSAEYEYS SSC

Best Arabidopsis Sequence Match ( AT1G53720.1 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.