Factsheet for PGSC0003DMT400043897

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytoskeleton 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011164	Potato	cytosol	60.62	63.24
Solyc12g038120.1.1	Tomato	nucleus	40.93	36.92
PGSC0003DMT400011166	Potato	nucleus	48.7	32.19
PGSC0003DMT400069100	Potato	cytosol	42.49	23.91
PGSC0003DMT400056014	Potato	cytosol	12.44	13.33
PGSC0003DMT400038471	Potato	cytosol	3.63	4.38
PGSC0003DMT400022853	Potato	cytosol	2.59	3.05
PGSC0003DMT400055240	Potato	cytosol	7.25	2.35
PGSC0003DMT400072698	Potato	mitochondrion, plastid	2.59	2.17
PGSC0003DMT400009946	Potato	mitochondrion	2.59	2.12
PGSC0003DMT400019171	Potato	cytosol	2.59	0.81
Solyc12g038110.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	InterPro:CRIP	InterPro:Cyclophilin-type_PPIase	GO:GO:0000413	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000504	InterPro:IPR012677
UniProt:M1BFB7	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400017036	PGSC:PGSC0003DMG400017036	EnsemblPlants:PGSC0003DMT400043897
PFscan:PS50102	PANTHER:PTHR11071	PANTHER:PTHR11071:SF156	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000294FD38	SEG:seg	:	:	:

Description

Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400017036]

Coordinates

chr9:-:12938591..12940074

Molecular Weight (calculated)

22038.5 Da

IEP (calculated)

4.057

GRAVY (calculated)

-0.429

Length

193 amino acids

Sequence
(BLAST)

001: MKVHISTDHD PLTESFFSFQ AAQEAVARES EMVGLKQNIL LLQDKVKFRE ARVTELEAIL GSSSKEEAIE NAEIDVDVDV DVGLEDDWGS MDERDLPYAE
101: IKPRDNNVLW VCNLNSVTED EDLYTIFSRF GTVASSEIIR DRETGDSHCY GFIEFEDKEA CELAYFKMDT ALIDDRRIQV GFSQSVAKSW NQY

Best Arabidopsis Sequence Match ( AT1G53720.2 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGK SFFFSPPYGI SDLL

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.