Factsheet for Solyc12g038120.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g038020.1.1	Tomato	cytosol	40.65	51.18
Solyc12g049430.1.1	Tomato	cytoskeleton, cytosol, nucleus	76.64	42.93
PGSC0003DMT400043897	Potato	cytoskeleton, cytosol, nucleus	36.92	40.93
Solyc12g038000.1.1	Tomato	nucleus	36.92	36.92
Solyc02g061800.2.1	Tomato	cytosol	47.2	34.47
Solyc12g038150.1.1	Tomato	nucleus	21.03	27.27
Solyc12g038010.1.1	Tomato	mitochondrion	22.43	24.37
Solyc07g066420.2.1	Tomato	nucleus	64.49	23.51
Solyc12g089200.1.1	Tomato	nucleus	1.87	5.33
Solyc08g062700.2.1	Tomato	nucleus	11.68	5.08
Solyc12g038070.1.1	Tomato	endoplasmic reticulum, extracellular, nucleus	2.8	3.8
Solyc12g038030.1.1	Tomato	cytosol	1.4	3.23
Solyc09g010190.2.1	Tomato	nucleus	1.87	2.44
Solyc08g006090.2.1	Tomato	cytosol, nucleus	1.4	1.88
Solyc02g092380.2.1	Tomato	nucleus	4.67	1.68
Solyc11g067090.1.1	Tomato	cytosol, nucleus	1.4	0.48
Solyc10g083930.1.1	Tomato	nucleus	0.47	0.43
Solyc09g008410.2.1	Tomato	plastid	0.0	0.0
Solyc12g038110.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	InterPro:CRIP	InterPro:Cyclophilin-type_PPIase	GO:GO:0000413	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000504	InterPro:IPR012677
UniProt:K4DEG7	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR11071	PANTHER:PTHR11071:SF156
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc12g038120.1	EnsemblPlants:Solyc12g038120.1.1
UniParc:UPI000276A33E	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:49166030..49166906

Molecular Weight (calculated)

24887.3 Da

IEP (calculated)

6.950

GRAVY (calculated)

-0.949

Length

214 amino acids

Sequence
(BLAST)

001: MASACNDASP ERKLKDEIDD DIRLEDDWMP KYEELGVHEE KEAHSRTVIL EILGDIPDAE MKPPDNVLFV CKLNPSTKEE ALYIIFSRFG TVTSAEIIRY
101: HKTGDSHCYA FIEFEDKESC EQEYFKMDNT KIDDRRIQVD LSLSVAKLWS QYRPKNQRSS VRLNNGSVDA VKQQKEESKQ HGGDGNSKYS KFMRTRKATR
201: YHKGRKHLQI TKPH

Best Arabidopsis Sequence Match ( AT1G53720.1 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.