Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g089200.1.1 | Tomato | nucleus | 23.03 | 50.67 |
| PGSC0003DMT400056014 | Potato | cytosol | 48.48 | 44.44 |
| Solyc12g038010.1.1 | Tomato | mitochondrion | 52.12 | 43.65 |
| Solyc12g038110.1.1 | Tomato | endoplasmic reticulum, extracellular | 11.52 | 31.15 |
| Solyc02g061800.2.1 | Tomato | cytosol | 46.67 | 26.28 |
| Solyc12g049430.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 59.39 | 25.65 |
| Solyc12g038000.1.1 | Tomato | nucleus | 30.91 | 23.83 |
| Solyc12g038030.1.1 | Tomato | cytosol | 13.33 | 23.66 |
| Solyc12g038120.1.1 | Tomato | nucleus | 27.27 | 21.03 |
| Solyc09g010190.2.1 | Tomato | nucleus | 20.0 | 20.12 |
| Solyc08g006090.2.1 | Tomato | cytosol, nucleus | 18.79 | 19.38 |
| Solyc07g066420.2.1 | Tomato | nucleus | 56.97 | 16.01 |
| Solyc12g038070.1.1 | Tomato | endoplasmic reticulum, extracellular, nucleus | 15.15 | 15.82 |
| Solyc12g038020.1.1 | Tomato | cytosol | 9.7 | 9.41 |
| Solyc08g062700.2.1 | Tomato | nucleus | 24.85 | 8.33 |
| Solyc02g092380.2.1 | Tomato | nucleus | 20.0 | 5.54 |
| Solyc10g083930.1.1 | Tomato | nucleus | 6.67 | 4.78 |
| Solyc11g067090.1.1 | Tomato | cytosol, nucleus | 15.76 | 4.18 |
| Solyc09g008410.2.1 | Tomato | plastid | 5.45 | 3.81 |
Protein Annotations
| MapMan:18.12.1 | Gene3D:2.40.100.10 | InterPro:CRIP | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_dom |
| GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006139 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:1901407 |
| InterPro:IPR002130 | InterPro:IPR029000 | UniProt:K4DEH0 | PFAM:PF00160 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF156 |
| SUPFAM:SSF50891 | EnsemblPlantsGene:Solyc12g038150.1 | EnsemblPlants:Solyc12g038150.1.1 | UniParc:UPI000276A341 | : | : |
Description
No Description!
Coordinates
chr12:+:48889654..48890325
Molecular Weight (calculated)
18895.2 Da
IEP (calculated)
4.482
GRAVY (calculated)
-0.533
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSNVQKLSE VMQDQIFHIC LFQTVRKDLT TQTGDPTRTG LGGDSIYKFL YSNQAYFFDD EIHSDLKHSK RGTIAMASAG TREKKFFSSF ISRYLADLIS
101: DASPERKPKD EIDDVRQEDD WIQEDEELGV HEEKEAHLRE VLLESVGDIP DAEMKPLTMC SLFVI
101: DASPERKPKD EIDDVRQEDD WIQEDEELGV HEEKEAHLRE VLLESVGDIP DAEMKPLTMC SLFVI
001: MSFDLQELPQ ALKGCVFQNV QKGFIAQTGD PTGTGTSGDS IYRFLHGDHM DGTFIDDRKI HVGFNQSSFK IWRQVWRKDS QHGKDHVAKS PEKRELRRHG
101: SEKIHRRSSH GYGEGRKRHG DERYTEDKAG KYDGRRQEFR ELERVFNDKL SKEKKLQREE KEIVRMMNTE EKYAAKKREW GLHHVPAHEI GQT
101: SEKIHRRSSH GYGEGRKRHG DERYTEDKAG KYDGRRQEFR ELERVFNDKL SKEKKLQREE KEIVRMMNTE EKYAAKKREW GLHHVPAHEI GQT
Arabidopsis Description
Cyclophilin [Source:UniProtKB/TrEMBL;Acc:Q94LA7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.