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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400019171 Potato cytosol 98.39 98.55
KRH22711 Soybean nucleus 86.98 87.82
KRH26593 Soybean nucleus 86.66 87.5
Bra019430.1-P Field mustard cytosol 83.12 83.12
CDX99192 Canola cytosol 82.96 82.96
CDY08708 Canola cytosol 82.8 82.8
GSMUA_Achr1P17040_001 Banana cytosol 83.28 82.75
VIT_06s0061g01590.t01 Wine grape cytosol 78.46 82.15
AT3G44600.1 Thale cress cytosol 83.12 81.93
TraesCS7B01G175400.1 Wheat cytosol 82.32 79.01
TraesCS7A01G277700.1 Wheat cytosol 82.32 79.01
OQU80719 Sorghum cytosol 82.15 78.98
TraesCS7D01G277600.1 Wheat nucleus 82.15 78.86
HORVU7Hr1G058730.3 Barley cytosol, mitochondrion, nucleus 81.99 75.33
Zm00001d049958_P002 Maize cytosol 80.87 74.96
Solyc09g010190.2.1 Tomato nucleus 13.02 49.39
Solyc08g006090.2.1 Tomato cytosol, nucleus 12.06 46.88
Solyc12g089200.1.1 Tomato nucleus 5.14 42.67
Solyc12g038110.1.1 Tomato endoplasmic reticulum, extracellular 4.02 40.98
Solyc12g038030.1.1 Tomato cytosol 5.63 37.63
Solyc10g083930.1.1 Tomato nucleus 10.61 28.7
Solyc09g008410.2.1 Tomato plastid 10.77 28.39
Solyc02g092380.2.1 Tomato nucleus 21.86 22.82
Solyc02g061800.2.1 Tomato cytosol 10.29 21.84
Solyc12g038070.1.1 Tomato endoplasmic reticulum, extracellular, nucleus 5.47 21.52
Solyc12g049430.1.1 Tomato cytoskeleton, cytosol, nucleus 10.29 16.75
Solyc12g038010.1.1 Tomato mitochondrion 5.31 16.75
Solyc12g038150.1.1 Tomato nucleus 4.18 15.76
Solyc08g062700.2.1 Tomato nucleus 12.38 15.65
Solyc12g038000.1.1 Tomato nucleus 4.82 14.02
Solyc07g066420.2.1 Tomato nucleus 9.65 10.22
Solyc12g038120.1.1 Tomato nucleus 0.48 1.4
Solyc12g038020.1.1 Tomato cytosol 0.0 0.0
Protein Annotations
MapMan:18.12.1Gene3D:2.130.10.10Gene3D:2.40.100.10InterPro:Cyclophilin-like_dom_sfInterPro:Cyclophilin-type_PPIaseInterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_domGO:GO:0000003GO:GO:0000413GO:GO:0003674GO:GO:0003682GO:GO:0003755
GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006457GO:GO:0006464GO:GO:0007275GO:GO:0008150GO:GO:0008152
GO:GO:0009653GO:GO:0009791GO:GO:0009908GO:GO:0009909GO:GO:0009933GO:GO:0009987
GO:GO:0010082GO:GO:0010305GO:GO:0010338GO:GO:0010358GO:GO:0016043GO:GO:0016853
GO:GO:0019538GO:GO:0031060GO:GO:0040007GO:GO:0042393GO:GO:0048440GO:GO:0048443
GO:GO:0048453InterPro:IPR001680InterPro:IPR002130InterPro:IPR015943InterPro:IPR017986InterPro:IPR029000
UniProt:K4D9W6PFAM:PF00160PFAM:PF00400PRINTS:PR00153ScanProsite:PS00170PFscan:PS50072
PFscan:PS50294PANTHER:PTHR11071PANTHER:PTHR11071:SF213SMART:SM00320SUPFAM:SSF50891SUPFAM:SSF50978
SUPFAM:SSF69322EnsemblPlantsGene:Solyc11g067090.1EnsemblPlants:Solyc11g067090.1.1UniParc:UPI000276A2DDInterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeat
InterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg:::
Description
Peptidyl-prolyl cis-trans isomerase CYP71 [Source:Projected from Arabidopsis thaliana (AT3G44600) UniProtKB/Swiss-Prot;Acc:Q8W4D0]
Coordinates
chr11:+:52836615..52843766
Molecular Weight (calculated)
70042.7 Da
IEP (calculated)
7.077
GRAVY (calculated)
-0.385
Length
622 amino acids
Sequence
(BLAST)
001: MEEADQNENG NPAAAVVEET ETVIGPGPAP RARAKRPLQF EQAYLDSLPS ANLYEKSYMH RDVVTHVAVS AADFFISGST DGHLKFWKKK PTGIEFAKHF
101: RSHLGPIEGL AVSIDGMLCC TISSDKSLKI YDVVNYDMMS MIRLPFIPGC VEWVYKQGDV KAKLAVSDRN SSLVHIYDAR AGTNDPIISK EVQLCPIKVM
201: KYNHVFDTVI SADDKGIIEY WSPATLKFPE NLVNFRLKSD TDLFEIVKCK TAVSSIEVSP DGKQFSVTSP DRRIRIFWFK TGKLRRVYDE SLEVAQDLQR
301: SDVPLYRLEA IDFGRRMAVE KEIEKTECVP QPNAVFDESS NFIIYATLLG IKIINLHTNK VSRILGKVES NDRFLRIALY QGDRSSKKVR KIPAAAANAN
401: ESKEPLIDPN LLCCAFKKHR IYLFSQREPE EPDDPTKGRD VFNEKPPPDE LLAVSDIGKS VTTSLPDNVI MHTSMGDIHM KLYPEECPKT VENFTTHCRN
501: GYYDNLIFHR VIRGFMVQTG DPLGDGTGGQ SIWGREFEDE FHKSLRHDRP FTVSMANAGP NTNGSQFFIT TVATPWLDNK HTVFGRVVKG MDVVQSLEKV
601: KTDKGDKPYQ DVKILNVTVP KS
Best Arabidopsis Sequence Match ( AT3G44600.1 )
(BLAST)
001: MEEESKNGGT TIPTEELAVV AVPPVVEEEE PMVGPGPAPR GKRKRPLQFE QAYLDSLPSA NMYEKSYMHR DVVTHVAVSA AEFFISGSMD GHLKFWKKKG
101: VGIEFAKHFR SHLGPIEGLA VSIDGLLCCT ISNDHAVKIY DVVNYDMMAM IRLPYIPGAV EWVYKQGDVK AKLAVSDRDS LFVHIYDPRS GSNEPIASKE
201: IHMNPIKVMK YNPVSDTMIS GDTKGIIEYW SATTLQFPED EVNFKLKSDT NLFEIIKCKT TISAIEVSPD GKQFSITAPD RRIRVFWFRT GKLRRVYDES
301: LVVAQDLQRS DAPLYRLEAI DFGRRMAVEK ELEKTESAPQ PNAVFDESSN FLIYATFLGI KVINLHTNTV ARILGKVESN ERYLRVALYQ GDQGGKKVRK
401: IPAAAANVNE SKEPLTDPTI LCCAFKKHRI YMFSRREPEE PEDASQGRDV FNEKPAADEL MSVSDIGNSA TTSLPENVIM HTTLGDIHMK LYPEECPKTV
501: ENFTTHCRNG YYDNHLFHRV IRGFMIQTGD PLGDGTGGQS IWGREFEDEF HKSLRHDRPF TLSMANAGPN TNGSQFFITT VATPWLDNKH TVFGRVVKGM
601: DVVQGIEKVK TDKNDRPYQD VKILNVTVPK S
Arabidopsis Description
CYP71Peptidyl-prolyl cis-trans isomerase CYP71 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4D0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.