Factsheet for Solyc08g006090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038471	Potato	cytosol	99.38	99.38
Bra032657.1-P	Field mustard	cytosol	93.75	93.75
AT1G01940.1	Thale cress	cytosol	93.75	93.75
VIT_15s0048g01780.t01	Wine grape	cytosol	91.88	91.88
KRH76297	Soybean	cytosol	93.75	90.91
Os06t0130500-01	Rice	cytosol	89.38	89.38
EER87777	Sorghum	cytosol	88.75	88.75
Zm00001d036035_P001	Maize	cytosol	87.5	87.5
TraesCS7A01G066500.1	Wheat	cytosol	86.25	86.25
TraesCS4A01G423000.1	Wheat	cytosol	86.25	86.25
TraesCS7D01G060700.1	Wheat	cytosol	85.62	85.62
CDY38037	Canola	mitochondrion, plastid	93.75	77.72
Solyc09g010190.2.1	Tomato	nucleus	46.88	45.73
Solyc12g089200.1.1	Tomato	nucleus	21.25	45.33
Solyc12g038110.1.1	Tomato	endoplasmic reticulum, extracellular	16.88	44.26
Solyc12g038030.1.1	Tomato	cytosol	23.75	40.86
Solyc02g061800.2.1	Tomato	cytosol	43.75	23.89
Solyc12g038070.1.1	Tomato	endoplasmic reticulum, extracellular, nucleus	23.12	23.42
Solyc10g083930.1.1	Tomato	nucleus	28.75	20.0
Solyc09g008410.2.1	Tomato	plastid	28.75	19.49
Solyc12g038150.1.1	Tomato	nucleus	19.38	18.79
Solyc12g049430.1.1	Tomato	cytoskeleton, cytosol, nucleus	42.5	17.8
Solyc12g038010.1.1	Tomato	mitochondrion	21.88	17.77
Solyc12g038000.1.1	Tomato	nucleus	20.62	15.42
Solyc02g092380.2.1	Tomato	nucleus	55.62	14.93
Solyc08g062700.2.1	Tomato	nucleus	44.38	14.43
Solyc11g067090.1.1	Tomato	cytosol, nucleus	46.88	12.06
Solyc07g066420.2.1	Tomato	nucleus	43.12	11.75
Solyc12g038120.1.1	Tomato	nucleus	1.88	1.4
Solyc12g038020.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130
InterPro:IPR029000	UniProt:K4CI98	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF147	SUPFAM:SSF50891	EnsemblPlantsGene:Solyc08g006090.2	EnsemblPlants:Solyc08g006090.2.1
UniParc:UPI000276BC6B	SEG:seg	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase CYP18-1 [Source:Projected from Arabidopsis thaliana (AT1G01940) UniProtKB/Swiss-Prot;Acc:Q9LPC7]

Coordinates

chr8:+:833901..839601

Molecular Weight (calculated)

17532.0 Da

IEP (calculated)

7.600

GRAVY (calculated)

-0.304

Length

160 amino acids

Sequence
(BLAST)

001: MSVTLHTNLG DIKCEIFCDE VPRTAENFLA LCSSDYYDGT IFHRNIKGFM IQGGDPTGTG KGGTSIWGKK FNDEIRESLK HNARGMLAMA NSGPNTNGSQ
101: FFITYAKQPH LNGLYTIFGK VIHGFEVLDL MEKTPTGPGD KPLAEIRLNR VTIHANPLAG

Best Arabidopsis Sequence Match ( AT1G01940.1 )
(BLAST)

001: MSVTLHTNLG DIKCEIFCDE VPKSAENFLA LCASGYYDGT IFHRNIKGFM IQGGDPKGTG KGGTSIWGKK FNDEIRDSLK HNARGMLSMA NSGPNTNGSQ
101: FFITYAKQPH LNGLYTIFGK VIHGFEVLDI MEKTQTGPGD RPLAEIRLNR VTIHANPLAG

Arabidopsis Description

CYP18-1Peptidyl-prolyl cis-trans isomerase CYP18-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.