Factsheet for Solyc12g049430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011166	Potato	nucleus	66.75	87.33
Solyc02g061800.2.1	Tomato	cytosol	66.49	86.69
Solyc12g038110.1.1	Tomato	endoplasmic reticulum, extracellular	12.57	78.69
Solyc12g089200.1.1	Tomato	nucleus	15.18	77.33
Solyc12g038120.1.1	Tomato	nucleus	42.93	76.64
Solyc12g038030.1.1	Tomato	cytosol	18.59	76.34
Solyc12g038000.1.1	Tomato	nucleus	41.36	73.83
Solyc12g038010.1.1	Tomato	mitochondrion	32.72	63.45
Solyc12g038150.1.1	Tomato	nucleus	25.65	59.39
Solyc12g038070.1.1	Tomato	endoplasmic reticulum, extracellular, nucleus	24.35	58.86
Solyc12g038020.1.1	Tomato	cytosol	21.99	49.41
Solyc07g066420.2.1	Tomato	nucleus	72.25	47.02
Solyc08g006090.2.1	Tomato	cytosol, nucleus	17.8	42.5
Solyc09g010190.2.1	Tomato	nucleus	17.54	40.85
Solyc08g062700.2.1	Tomato	nucleus	23.56	18.29
Solyc09g008410.2.1	Tomato	plastid	9.16	14.83
Solyc10g083930.1.1	Tomato	nucleus	8.64	14.35
Solyc02g092380.2.1	Tomato	nucleus	18.85	12.08
Solyc11g067090.1.1	Tomato	cytosol, nucleus	16.75	10.29

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.70.330	InterPro:CRIP	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_dom	InterPro:Cyclophilin_PPIL4	GO:GO:0000413	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	GO:GO:1901407
InterPro:IPR000504	InterPro:IPR002130	InterPro:IPR012677	InterPro:IPR029000	UniProt:K4DFM3	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00160	PRINTS:PR00153	PFscan:PS50072	PFscan:PS50102	PANTHER:PTHR11071
PANTHER:PTHR11071:SF156	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF50891	SUPFAM:SSF54928
EnsemblPlantsGene:Solyc12g049430.1	EnsemblPlants:Solyc12g049430.1.1	UniParc:UPI00027699F5	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:36842793..36843941

Molecular Weight (calculated)

43881.5 Da

IEP (calculated)

5.759

GRAVY (calculated)

-0.779

Length

382 amino acids

Sequence
(BLAST)

001: MSVMIVTSLG DMVIDLFTDE CPLTCKNFLK LCKIKYYHNC LLHTVRKNFT MQTGDPTGTG SGGDSIYKFL YGSQARFFGD EIHPRLKHSK KGTVAMSSTG
101: IGEKNLNASQ FYITLRDDLD SLDGQHTVFG EITEGFDTLN RINEAYVDDK GKPHQNIRIK HTYLLYDPFD DPSQLEDLIP DASPERKPED EIDDDDDVRL
201: EDDWTPKDEE LGVGEEKEAH SRAVILESVG DIPDAEMKPP ENVLFVCKLN PSTEEEALYI IFSCFGTVTS VEIIRDHKTG DSHCYAFIEF EDKESCEQAY
301: FKMDNTKIDD RRIRVDFSQS VAKLWSQYRP RTQRGSGVDA FKEDKKQHGG HCNSKYTKFL KTRKETRNHK ERKHRQITKK TR

Best Arabidopsis Sequence Match ( AT1G53720.1 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.