Factsheet for Solyc12g038070.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, nucleus

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
cytosol 1
extracellular 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g038110.1.1	Tomato	endoplasmic reticulum, extracellular	18.35	47.54
Solyc12g038030.1.1	Tomato	cytosol	27.85	47.31
Solyc02g061800.2.1	Tomato	cytosol	60.76	32.76
Solyc12g038000.1.1	Tomato	nucleus	41.77	30.84
Solyc12g038010.1.1	Tomato	mitochondrion	34.81	27.92
Solyc12g049430.1.1	Tomato	cytoskeleton, cytosol, nucleus	58.86	24.35
Solyc12g089200.1.1	Tomato	nucleus	11.39	24.0
Solyc08g006090.2.1	Tomato	cytosol, nucleus	23.42	23.12
Solyc09g010190.2.1	Tomato	nucleus	22.78	21.95
PGSC0003DMT400011166	Potato	nucleus	39.24	21.23
Solyc12g038150.1.1	Tomato	nucleus	15.82	15.15
Solyc07g066420.2.1	Tomato	nucleus	55.7	14.99
Solyc10g083930.1.1	Tomato	nucleus	16.46	11.3
Solyc09g008410.2.1	Tomato	plastid	15.82	10.59
Solyc08g062700.2.1	Tomato	nucleus	20.25	6.5
Solyc02g092380.2.1	Tomato	nucleus	21.52	5.7
Solyc11g067090.1.1	Tomato	cytosol, nucleus	21.52	5.47
Solyc12g038120.1.1	Tomato	nucleus	3.8	2.8
Solyc12g038020.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.40.100.10	MapMan:50.5.2	InterPro:CRIP	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0006139
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0019538	GO:GO:1901407	InterPro:IPR002130	InterPro:IPR029000	UniProt:K4DEG2
PFAM:PF00160	PANTHER:PTHR11071	PANTHER:PTHR11071:SF156	SUPFAM:SSF50891	EnsemblPlantsGene:Solyc12g038070.1	EnsemblPlants:Solyc12g038070.1.1
TMHMM:TMhelix	UniParc:UPI000276A339	:	:	:	:

Description

No Description!

Coordinates

chr12:-:49340602..49341155

Molecular Weight (calculated)

18404.4 Da

IEP (calculated)

7.337

GRAVY (calculated)

-0.087

Length

158 amino acids

Sequence
(BLAST)

001: MSVMIVISLG DIAKDLFTDQ CPLTCKNIIK LCKIKHYIIL SFTLFESISQ GRREIQKEKD WEGIQYKNFY VVTRIIFSMM GFILFYITLR DNLNTLDGER
101: TVFGEIALGF DTSNRINGTY VDDKVKPYQN SRIKHTYILY DPFQLVDLIP DASPERNP

Best Arabidopsis Sequence Match ( AT1G53720.1 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.