Factsheet for Solyc07g066420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005820.2.1
Solyc01g096180.2.1
Solyc01g099810.2.1
Solyc01g105140.2.1
Solyc02g083230.2.1
Solyc02g083350.2.1
Solyc03g007010.2.1
Solyc05g054920.2.1
Solyc06g035450.2.1
Solyc09g005980.2.1
Solyc10g009330.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53720.1	Solyc01g099810.2.1	AT1G09140.1	16497658
AT1G53720.1	Solyc05g054920.2.1	AT2G37340.1	16497658
AT1G53720.1	Solyc09g005980.2.1	AT2G37340.1	16497658
AT1G53720.1	Solyc01g005820.2.1	AT3G13570.1	16497658
AT1G53720.1	Solyc01g096180.2.1	AT3G61860.1	16497658
AT1G53720.1	Solyc10g009330.2.1	AT3G61860.1	16497658
AT1G53720.1	Solyc02g083230.2.1	AT4G35800.1	16497658
AT1G53720.1	Solyc02g083350.2.1	AT4G35800.1	16497658
AT1G53720.1	Solyc03g007010.2.1	AT5G62190.1	16497658
AT1G53720.1	Solyc06g035450.2.1	AT5G62190.1	16497658
AT1G53720.1	Solyc01g105140.2.1	AT5G64200.2	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g089200.1.1	Tomato	nucleus	9.88	77.33
Solyc02g061800.2.1	Tomato	cytosol	37.82	75.77
Solyc12g038030.1.1	Tomato	cytosol	11.58	73.12
Solyc12g049430.1.1	Tomato	cytoskeleton, cytosol, nucleus	47.02	72.25
Solyc12g038110.1.1	Tomato	endoplasmic reticulum, extracellular	7.5	72.13
AT1G53720.1	Thale cress	nucleus	58.43	67.79
Solyc12g038000.1.1	Tomato	nucleus	24.19	66.36
HORVU6Hr1G042040.1	Barley	endoplasmic reticulum	22.83	65.05
Solyc12g038120.1.1	Tomato	nucleus	23.51	64.49
HORVU1Hr1G015670.5	Barley	cytosol	26.24	63.64
HORVU1Hr1G040970.1	Barley	cytosol, endoplasmic reticulum, mitochondrion	26.06	63.49
TraesCS3D01G065600.1	Wheat	cytosol	36.12	63.47
Bra030819.1-P	Field mustard	cytosol	58.43	63.05
KRH13056	Soybean	nucleus	66.27	61.45
KRG93223	Soybean	nucleus	66.78	61.25
Zm00001d036620_P001	Maize	nucleus	46.51	61.07
VIT_19s0027g01660.t01	Wine grape	nucleus	65.25	60.03
TraesCS3A01G064900.1	Wheat	cytosol	39.86	57.78
Solyc12g038010.1.1	Tomato	mitochondrion	19.25	57.36
TraesCS7A01G469800.1	Wheat	nucleus	54.51	57.25
HORVU7Hr1G107520.5	Barley	nucleus	54.34	57.07
Solyc12g038150.1.1	Tomato	nucleus	16.01	56.97
Os06t0670500-01	Rice	cytosol	54.68	56.91
TraesCS4A01G064400.1	Wheat	nucleus	46.34	56.9
TraesCS7D01G457200.1	Wheat	nucleus	54.17	56.89
TraesCS7B01G371900.1	Wheat	nucleus	54.17	56.89
TraesCS4D01G241400.1	Wheat	nucleus	46.51	56.76
GSMUA_Achr10P...	Banana	cytosol	53.15	56.32
TraesCS4B01G241800.1	Wheat	nucleus	44.63	56.22
Os06t0670400-00	Rice	cytosol	44.63	55.86
Solyc12g038070.1.1	Tomato	endoplasmic reticulum, extracellular, nucleus	14.99	55.7
EER88795	Sorghum	cytosol	52.98	55.64
CDY72459	Canola	cytosol, extracellular, plastid	10.05	50.43
Solyc12g038020.1.1	Tomato	cytosol	13.63	47.06
Solyc08g006090.2.1	Tomato	cytosol, nucleus	11.75	43.12
Solyc09g010190.2.1	Tomato	nucleus	11.75	42.07
CDY10512	Canola	nucleus	60.14	35.58
Solyc08g062700.2.1	Tomato	nucleus	17.04	20.33
Solyc09g008410.2.1	Tomato	plastid	5.79	14.41
Solyc10g083930.1.1	Tomato	nucleus	5.62	14.35
Solyc02g092380.2.1	Tomato	nucleus	12.61	12.42
Solyc11g067090.1.1	Tomato	cytosol, nucleus	10.22	9.65

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.70.330	Gene3D:4.10.60.10	InterPro:CRIP	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	InterPro:Cyclophilin_PPIL4	GO:GO:0000413	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	GO:GO:1901407	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR002130	InterPro:IPR012677
InterPro:IPR029000	UniProt:K4CHW7	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFAM:PF00160
PRINTS:PR00153	PFscan:PS50072	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR11071	PANTHER:PTHR11071:SF156
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF50891	SUPFAM:SSF54928
EnsemblPlantsGene:Solyc07g066420.2	EnsemblPlants:Solyc07g066420.2.1	UniParc:UPI000276B48B	InterPro:Znf_CCHC	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:67852598..67862328

Molecular Weight (calculated)

68099.4 Da

IEP (calculated)

5.520

GRAVY (calculated)

-1.249

Length

587 amino acids

Sequence
(BLAST)

001: MSVMIVTSLG EIVIDLFTDR CPLTCKNFLK LCKIKYYNGC LFHTIQKDFT AQTGDPTGTG SGGDSVYKIL YGDQARFFGD EIHLDLKHSK MGTVAMASAG
101: ENLNASQFYI TLRDDLDYLD GKHTVFGEMA EGQETLDRIN EAYVDGKGRP FKNIRIKHTY ILDDPFDDPP QLSELVPDAS PEGKPKDEVE DDVRLEDDWV
201: PMDEQLGMQE LEEVLRAKEA HSRAVVLESV GDIPDAEIKP PDNVLFVCKL NPVTEDEDLY TIFSRFGTVT SAEIIRDFKT GDSLCYAFIE FEDKEACEQA
301: YFKMDNALID DRRIHVDFSQ SVAKLWSQYR RKDQTGKGRG CFKCGSLDHM AKDCTGDATK QQSNYILKEE DNKQHGGDGN SRYEMVFDED AAGSPKRNKR
401: GREFEGGKHY ENQNPKRREL EDDGARKDRK RDGYERHRLE DRSNDYRTEE RHRGSGMRAS GEKERDYRGR NDLDYRRNTN YDNRKAGGER QDHDKRPADN
501: VRHVDKDYRG EREKRDRRDE VEYDGGHADE VRYKDNSQNR GRGEEQDRGK RRSEGDDARA RDRDRDRYRD HDRRRDRPRD HDRGRRN

Best Arabidopsis Sequence Match ( AT1G53720.1 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.