Factsheet for Solyc06g035450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g066420.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	Solyc07g066420.2.1	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	95.26	57.1
Solyc03g007010.2.1	Tomato	nucleus	78.8	46.33
CDY28363	Canola	plastid	31.42	45.99
VIT_16s0022g02110.t01	Wine grape	plastid	68.08	39.34
Bra035903.1-P	Field mustard	nucleus	60.6	38.39
GSMUA_Achr7P05930_001	Banana	nucleus	57.86	38.22
CDX87236	Canola	nucleus	60.6	38.15
CDY16789	Canola	nucleus	60.35	38.11
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	23.19	37.2
KRH35418	Soybean	endoplasmic reticulum	64.09	36.87
KRG91400	Soybean	nucleus	63.59	36.8
Bra029275.1-P	Field mustard	nucleus	58.85	35.81
AT5G62190.1	Thale cress	nucleus	59.1	35.32
GSMUA_Achr4P19590_001	Banana	nucleus	62.34	34.72
HORVU5Hr1G080170.2	Barley	nucleus	55.61	34.41
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	58.6	33.57
Zm00001d006160_P001	Maize	nucleus	58.85	33.52
TraesCS5A01G308900.1	Wheat	nucleus	58.35	33.48
TraesCS5B01G309500.1	Wheat	nucleus	58.35	33.43
EER97062	Sorghum	nucleus	59.1	33.33
Os09t0520700-01	Rice	nucleus, plastid	57.61	33.19
Zm00001d021196_P004	Maize	nucleus	58.35	33.1
Zm00001d035797_P001	Maize	mitochondrion	33.92	23.86
Zm00001d049075_P001	Maize	extracellular, golgi	23.69	19.63
CDY34116	Canola	cytosol	24.94	19.61
Solyc07g044760.2.1	Tomato	plastid	30.67	19.52
Solyc12g006320.1.1	Tomato	plastid	30.92	19.28
Zm00001d035226_P001	Maize	plasma membrane	15.46	17.82
Solyc07g005890.2.1	Tomato	nucleus	21.95	17.15
Solyc08g042050.2.1	Tomato	plastid	31.17	16.76
Zm00001d050438_P002	Maize	extracellular	10.22	12.73
CDY44622	Canola	cytosol	24.94	11.57
Zm00001d024138_P001	Maize	plastid	6.73	9.57
Zm00001d046048_P001	Maize	cytosol	0.75	1.6
Zm00001d049254_P001	Maize	cytosol	0.5	1.05

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:IPR014001
InterPro:IPR014014	UniProt:K4C4R7	InterPro:P-loop_NTPase	PFAM:PF00270	PFscan:PS51192	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF237	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc06g035450.2
EnsemblPlants:Solyc06g035450.2.1	UniParc:UPI0002765B64	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:24350869..24354981

Molecular Weight (calculated)

44040.5 Da

IEP (calculated)

9.733

GRAVY (calculated)

-0.380

Length

401 amino acids

Sequence
(BLAST)

001: MPALVVTEET MASELSKKKM KKTPKTDIET PTDKKTKEKK SKKSKIESGS DSEDAKRSKK KEKKRKALDL DGEKSDTSSE ICEPVDLKKN KKAKFDDEQV
101: MVEKKVEDPN ALSNFRISKP LKEALNSKGI EALFPIQAMT FDDILDGCDL VGRARTGQGK TLAFVLPILE SLTNGPTKAL RKTGYGKAPS VLVLLPTREL
201: ALQVFADFEV YGRAVGLTSC CLYGNSPMGA QQAQLKRGVD IVVGTPGRVK DHIERGNIDF GSLKFRVLDE VDEMLKIGFV DDVEFILGKV EDASLVQTVL
301: FSATLPVWVK HIASKFLKPD KKTADLVGNE KMKASKNVRH IIIPCSSSAR PQLIPDIIRC YGSGGRTIIF TETRALASEL AGLLPGASAL HGEIQQNQRY
401: T

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.