CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY10512
CDY72459

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	CDY10512	AT1G53720.1	16497658
AT5G62190.1	CDY72459	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16789	Canola	nucleus	96.7	97.01
AT5G62190.1	Thale cress	nucleus	78.81	74.81
CDY28363	Canola	plastid	31.55	73.36
VIT_16s0022g02110.t01	Wine grape	plastid	68.45	62.82
GSMUA_Achr7P05930_001	Banana	nucleus	59.65	62.6
PGSC0003DMT400079640	Potato	nucleus	65.78	62.17
Solyc03g007010.2.1	Tomato	nucleus	66.09	61.73
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	64.68	61.58
HORVU5Hr1G080170.2	Barley	nucleus	61.7	60.65
KRG91400	Soybean	nucleus	65.93	60.61
Solyc06g035450.2.1	Tomato	nucleus	38.15	60.6
KRH35418	Soybean	endoplasmic reticulum	66.25	60.55
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	63.27	57.57
TraesCS5B01G309500.1	Wheat	nucleus	63.27	57.57
TraesCS5A01G308900.1	Wheat	nucleus	62.95	57.37
Zm00001d006160_P001	Maize	nucleus	61.38	55.54
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	21.66	55.2
Os09t0520700-01	Rice	nucleus, plastid	60.13	55.03
GSMUA_Achr4P19590_001	Banana	nucleus	62.17	55.0
EER97062	Sorghum	nucleus	61.38	54.99
Zm00001d021196_P004	Maize	nucleus	60.44	54.46
CDY34116	Canola	cytosol	31.55	39.41
Zm00001d035226_P001	Maize	plasma membrane	18.05	33.05
Zm00001d035797_P001	Maize	mitochondrion	29.51	32.98
CDY46329	Canola	mitochondrion	28.41	32.97
CDY37406	Canola	mitochondrion	26.22	32.75
Zm00001d049075_P001	Maize	extracellular, golgi	24.49	32.23
Zm00001d050438_P002	Maize	extracellular	15.86	31.37
CDY66725	Canola	plastid	35.79	30.69
CDX80564	Canola	plastid	34.85	30.49
CDY05524	Canola	plastid	35.32	30.49
CDX87045	Canola	plastid	35.48	30.29
CDY46330	Canola	nucleus	13.81	30.14
CDY61108	Canola	plastid	35.16	29.87
CDY37408	Canola	mitochondrion	27.94	29.62
CDY10634	Canola	mitochondrion	27.94	29.57
CDY19766	Canola	plastid	35.32	29.57
Zm00001d024138_P001	Maize	plastid	12.4	28.01
Zm00001d049254_P001	Maize	cytosol	7.69	25.65
CDY44622	Canola	cytosol	32.81	24.19
Zm00001d046048_P001	Maize	cytosol	7.06	23.94
CDY44172	Canola	cytosol	17.27	20.72
CDY22890	Canola	cytosol	17.11	20.53

Protein Annotations

Gene3D:3.30.70.2280	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078DD88	EnsemblPlants:CDX87236	ProteinID:CDX87236
ProteinID:CDX87236.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00146172001	InterPro:GUCT	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF08152	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF327	InterPro:RBD_domain_sf	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF54928	UniParc:UPI0004EF1918	SEG:seg	:

Description

BnaC09g05510D

Coordinates

chrLK031849:-:1343013..1346498

Molecular Weight (calculated)

69315.6 Da

IEP (calculated)

10.020

GRAVY (calculated)

-0.399

Length

637 amino acids

Sequence
(BLAST)

001: MPSLALSDKK KEEKKMKKKI DLETTTPEQQ DSKKKGKKLK LSDSDGEEKK SKKKRKSIDE SEEEPEKKSK KVKLSSSVED VKVDNPNAVS NFRISDPLKA
101: KLKEKGIEAL FPIQATTFDM VLDGADLVGR ARTGQGKTLA FVLPILESLI NGPAKSKRKN GYGRPPSVLV LLPTRELAKQ VFADFEAYGG AVGLASCCVY
201: GGDPYAPQER KLKSGVDIVV GTPGRIKDHI ERRNLDLTYL QFRVLDEADE MLRMGFVDDV ELILGKVEDP KKVQTLLFSA TLPSWVQTIA ARFLKQDKKT
301: IDLVGNDKMK ASNSVRHIAL PCNKQAMSRL IPDIISLYSS GGSTIIFTET KDQASELSGL LPGARALHGD IQQSQREITL AGFRKGKFST LVATNVAARG
401: LDINDVQLII QCEPPRDVED YIHRSGRTGR AGNTGVAVML YDSRKSGPND IARAVGMEAA EKITQVCDSV VPAFMAAAKE LLESSGVSAE VLLAKALAKT
501: AGFTEIKKRS LLTSMENHVT LLFEAGKPIY TPSFVIGSLK RILPEDKANS IEGLTLTADG QGAVFDVAQS DVDQFISAAQ KTASVSLEVV KELPKLQERE
601: PMARGRFGRQ GGQGFNHRGR GGRFGRGGRG GGGGQRW

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.