CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05524	Canola	plastid	96.23	96.88
CDX87045	Canola	plastid	94.35	93.97
CDX80564	Canola	plastid	91.79	93.68
CDY61108	Canola	plastid	94.08	93.2
CDY19766	Canola	plastid	93.94	91.72
AT5G26742.2	Thale cress	plastid	90.44	89.84
VIT_14s0060g00060.t01	Wine grape	plastid	74.97	72.91
GSMUA_Achr2P01980_001	Banana	nucleus	67.43	71.98
KRG96641	Soybean	nucleus	72.95	70.3
Os03t0827700-01	Rice	nucleus	67.7	69.57
Solyc08g042050.2.1	Tomato	plastid	69.72	69.44
KRH68372	Soybean	nucleus	72.01	69.39
KRH33703	Soybean	plastid	68.51	69.16
KRG90413	Soybean	plastid	68.37	69.02
GSMUA_Achr11P...	Banana	plastid	71.2	68.35
Zm00001d012922_P003	Maize	plastid	67.83	67.65
Zm00001d034721_P002	Maize	plastid	67.97	66.62
KXG37219	Sorghum	plastid	68.64	66.41
TraesCS4A01G367700.1	Wheat	nucleus	67.97	66.01
TraesCS5D01G505700.2	Wheat	plastid	68.1	65.63
TraesCS5B01G504900.1	Wheat	plastid	66.62	61.57
CDY46330	Canola	nucleus	21.4	54.45
CDY46329	Canola	mitochondrion	35.4	47.91
CDY37406	Canola	mitochondrion	32.84	47.84
CDY37408	Canola	mitochondrion	35.94	44.43
CDY10634	Canola	mitochondrion	35.94	44.35
CDY28363	Canola	plastid	13.73	37.23
CDY16789	Canola	nucleus	31.22	36.54
CDX87236	Canola	nucleus	30.69	35.79
CDY44172	Canola	cytosol	18.57	25.99
CDY22890	Canola	cytosol	18.44	25.8
CDY34116	Canola	cytosol	13.59	19.8
CDY44622	Canola	cytosol	14.94	12.85

Protein Annotations

MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	GO:A0A078JJW3	UniProt:A0A078JJW3
EnsemblPlants:CDY66725	ProteinID:CDY66725	ProteinID:CDY66725.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00055633001	InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271
PFAM:PF08152	PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
SUPFAM:SSF57756	UniParc:UPI0004EF0CB1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

BnaC02g48430DBnaC02g48430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJW3]

Coordinates

chrLK035426:-:2347..6543

Molecular Weight (calculated)

80309.9 Da

IEP (calculated)

8.436

GRAVY (calculated)

-0.376

Length

743 amino acids

Sequence
(BLAST)

001: MASTVGVPSL YQVSHLETSK PISKKRSTFL PLSLDKPFFS SPISLRRTRL IHSSPSYAVA TPNSVLSEEA FKSLGLSDEF DNDHSEEDDG EELAISKLGL
101: PQRLGESLEK RGITHLFPIQ RAVLVPALQG RDIIARAKTG TGKTLAFGIP IIKRLTEQAG DYSAFRKSGR LPKFLVLAPT RELAKQVEKE IKESAPYLST
201: VCVYGGVSYT IQQSALTRGV DVVVGTPGRI IDLIEGRSLK LGEVEYLVLD EADQMLAVGF EEAVESILEN LPQKRQSMLF SATMPAWVKK LARKYLDSPL
301: NIDLVGDQDE KLAEGIKLYA ISATSTSKRT ILSDLITLYA KGGKTIVFTQ TKRDADEVSL ALSNSIASEA LHGDISQHQR ERTLNGFRQG KFTVLVATDV
401: ASRGLDIPNV DLVIHYELPN DPETFVHRSG RTGRAGKEGS AILMHSSSQK RTVRSLERDV GCRFEFISPP TVGDVLEASA DQVVATLNGV HPESIKFFSA
501: TAQKLHEEKG TDALAAALAH LSGFSQPPSS RSLLSHEQGW VTLQLVRDPT NSRGFLSARS VTGFLSDVYG PAADEVGKIF LIADERVQGA VFDLPEDIAK
601: DLLEKEMQEG NSISMITKLP PLQDDGPSSD NYGRFSSRDR MPRGGGGGSR GSRFGGRGGS SRGRDSWGGD DNRRGRSSGG GGSSWSRGGG SRGSSDDWLI
701: GGGSDRRSSS RRAPSRERSF GGACFTCGSS GHRAADCPDK RGF

Best Arabidopsis Sequence Match ( AT5G26742.2 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RERSFGGSCF ICGKSGHRAT DCPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.