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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plastid 6
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX80564 Canola plastid 89.04 91.48
CDX87045 Canola plastid 90.91 91.15
Bra009900.1-P Field mustard plastid 90.91 90.91
Bra036582.1-P Field mustard plastid 90.24 90.85
CDY05524 Canola plastid 89.57 90.79
CDY61108 Canola plastid 90.91 90.67
Bra020533.1-P Field mustard plastid 89.44 90.53
CDY66725 Canola plastid 89.84 90.44
CDY19766 Canola plastid 90.91 89.36
VIT_14s0060g00060.t01 Wine grape plastid 74.73 73.17
GSMUA_Achr2P01980_001 Banana nucleus 66.98 71.98
KRG96641 Soybean nucleus 72.33 70.17
KRH68372 Soybean nucleus 71.79 69.65
KRH33703 Soybean plastid 67.91 69.02
Solyc08g042050.2.1 Tomato plastid 68.72 68.9
KRG90413 Soybean plastid 67.65 68.75
Os03t0827700-01 Rice nucleus 66.31 68.6
GSMUA_Achr11P... Banana plastid 70.32 67.96
Zm00001d012922_P003 Maize plastid 67.11 67.38
Zm00001d034721_P002 Maize plastid 67.25 66.36
KXG37219 Sorghum plastid 67.78 66.02
TraesCS4A01G367700.1 Wheat nucleus 67.25 65.75
TraesCS5D01G505700.2 Wheat plastid 67.38 65.37
TraesCS5B01G504900.1 Wheat plastid 66.04 61.44
AT3G22310.1 Thale cress mitochondrion 36.5 44.75
AT3G22330.1 Thale cress mitochondrion 36.76 44.64
AT5G62190.1 Thale cress nucleus 30.35 33.83
AT4G15850.1 Thale cress nucleus 18.72 26.82
Protein Annotations
MapMan:16.12.2.1.1.5Gene3D:3.30.70.1800Gene3D:3.40.50.300Gene3D:4.10.60.10EntrezGene:832713UniProt:A0A178UT03
ProteinID:AAC13590.1EMBL:AC137518ProteinID:AED93564.1ProteinID:AED93565.1ProteinID:AED93566.1EMBL:AJ010457
EMBL:AK229821ArrayExpress:AT5G26742EnsemblPlantsGene:AT5G26742RefSeq:AT5G26742TAIR:AT5G26742RefSeq:AT5G26742-TAIR-G
EnsemblPlants:AT5G26742.2TAIR:AT5G26742.2EMBL:AY080625EMBL:AY091068EMBL:AY094485EMBL:AY102126
EMBL:AY123000EMBL:AY128278EMBL:BT000713EMBL:BT002289EMBL:BT002456EMBL:BT004533
InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0000373GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003729GO:GO:0003824GO:GO:0004004GO:GO:0004386GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005730GO:GO:0005737
GO:GO:0006139GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0008270GO:GO:0009507
GO:GO:0009536GO:GO:0009570GO:GO:0009628GO:GO:0009651GO:GO:0009658GO:GO:0009941
GO:GO:0009987GO:GO:0010501GO:GO:0016020GO:GO:0016043GO:GO:0016787GO:GO:0042254
GO:GO:0046872InterPro:GUCTInterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR001878
InterPro:IPR014001InterPro:IPR014014RefSeq:NP_001031943.1RefSeq:NP_001190402.1RefSeq:NP_680225.2ProteinID:OAO96294.1
InterPro:P-loop_NTPasePFAM:PF00098PFAM:PF00270PFAM:PF00271PFAM:PF08152PO:PO:0000293
PO:PO:0009025PFscan:PS50158PFscan:PS51192PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031
PANTHER:PTHR24031:SF326UniProt:Q8L7S8InterPro:RNA_helicase_DEAD_Q_motifSMART:SM00343SMART:SM00487SMART:SM00490
SUPFAM:SSF52540SUPFAM:SSF57756UniParc:UPI00000AC2ABInterPro:Znf_CCHCInterPro:Znf_CCHC_sfSymbol:emb1138
SEG:seg:::::
Description
RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
Coordinates
chr5:-:9284557..9289003
Molecular Weight (calculated)
81161.0 Da
IEP (calculated)
7.910
GRAVY (calculated)
-0.370
Length
748 amino acids
Sequence
(BLAST)
001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RERSFGGSCF ICGKSGHRAT DCPDKRGF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.