CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90413	Soybean	plastid	93.75	93.75
KRG96641	Soybean	nucleus	79.21	75.62
KRH68372	Soybean	nucleus	78.12	74.58
GSMUA_Achr2P01980_001	Banana	nucleus	66.44	70.26
VIT_14s0060g00060.t01	Wine grape	plastid	72.69	70.03
CDX80564	Canola	plastid	68.34	69.09
CDX87045	Canola	plastid	69.97	69.03
Solyc08g042050.2.1	Tomato	plastid	69.97	69.03
Bra020533.1-P	Field mustard	plastid	69.02	68.74
CDY05524	Canola	plastid	68.89	68.7
CDY66725	Canola	plastid	69.16	68.51
Bra036582.1-P	Field mustard	plastid	68.89	68.24
Bra009900.1-P	Field mustard	plastid	69.02	67.91
AT5G26742.2	Thale cress	plastid	69.02	67.91
CDY61108	Canola	plastid	68.89	67.6
CDY19766	Canola	plastid	69.84	67.54
Os03t0827700-01	Rice	nucleus	65.49	66.67
Zm00001d012922_P003	Maize	plastid	65.35	64.56
GSMUA_Achr11P...	Banana	plastid	67.26	63.95
Zm00001d034721_P002	Maize	plastid	65.76	63.85
KXG37219	Sorghum	plastid	66.3	63.54
TraesCS4A01G367700.1	Wheat	nucleus	64.27	61.83
TraesCS5D01G505700.2	Wheat	plastid	64.13	61.22
TraesCS5B01G504900.1	Wheat	plastid	63.04	57.71
KRH14557	Soybean	mitochondrion	20.52	46.75
KRH73571	Soybean	nucleus	36.68	45.38
KRH45952	Soybean	mitochondrion	35.33	42.98
KRG99044	Soybean	mitochondrion	36.82	42.15
KRH14556	Soybean	cytosol	16.3	41.81
KRH35418	Soybean	endoplasmic reticulum	32.61	34.43
KRG91400	Soybean	nucleus	32.34	34.34
KRH42587	Soybean	nucleus	10.33	24.76
KRH15837	Soybean	nucleus	6.25	24.6
KRH15843	Soybean	cytosol	12.09	23.48
KRH15846	Soybean	nucleus	15.9	20.97
KRH44787	Soybean	nucleus	16.98	20.26

Protein Annotations

EntrezGene:100808574	MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	EMBL:ACUP02006550	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_10G140900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:GUCT
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1LAW9	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:KRH33703	ProteinID:KRH33703	ProteinID:KRH33703.1	InterPro:P-loop_NTPase	PFAM:PF00098
PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	PFscan:PS50158	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756	UniParc:UPI000233C647	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:37421265..37427610

Molecular Weight (calculated)

80221.8 Da

IEP (calculated)

8.203

GRAVY (calculated)

-0.373

Length

736 amino acids

Sequence
(BLAST)

001: MASTIGISSS ISIYKTPSFQ LFKRPAATTT SVFFNTLPRN RDATLSSVPS AIATPSILTE QPLKGLTLDD LSNSDQFGYD FEPDTNVSDH ELDISKLGLP
101: SPLVHSLQKR GIISLFPIQR AVLVPALEGK DIIARAKTGT GKTLAFGIPI LKGLTNDDEQ SPHRRSGRLP KALVLAPTRE LAKQVEKEIQ ESAPYLKTVC
201: VYGGVSYVTQ QSALSRGVDV VVGTPGRIID LVNGNSLKLS EVQYLVLDEA DQMLAVGFEE DVEVILDKVP TQRQTMLFSA TMPGWVKKLS RKYLNNPLTI
301: DLVGEQEEKL AEGIKLYALL ATATSKRTVL SDLITVYAKG GKTIVFTQTK KDADEVSMAL TSSIASEALH GDISQHQRER TLNGFRQGKF TVLVATDVAA
401: RGLDIPNVDL VIHYELPNDA ETFVHRSGRT GRAGKEGTAI LMYTSSQRRT VRSLERDVGS KFEFVSPPAV EEILESSAEQ VVATLNRVHP ESVEFFTATA
501: QKLVEEQGAR ALAAALAQMS GFSQPPSCRS LINHEQGWTT LQLTRDSDTS GRYFSARSVT GFLSDVYSQA ADEVGKIHLI ADERVQGAVF DLPEEIAKEL
601: LNKDMPSGNT ISKITKLPPL QDNEPASDFY GKFSDRDRSN PRGSRDQRGF RSSRGREGGQ DSNDEFGRGG RSFRSGNNRS RTTGKSSGND WLIGGSSRSS
701: RFSSSNRDGG HGGACFNCGK PGHRASDCIT QKRVFF

Best Arabidopsis Sequence Match ( AT5G26742.1 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RESFGGSCFI CGKSGHRATD CPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.