Factsheet for Zm00001d012922_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034721_P002	Maize	plastid	94.23	92.61
KXG37219	Sorghum	plastid	94.23	91.41
Os03t0827700-01	Rice	nucleus	85.23	87.83
TraesCS4A01G367700.1	Wheat	nucleus	84.03	81.83
TraesCS5D01G505700.2	Wheat	plastid	84.3	81.45
TraesCS5B01G504900.1	Wheat	plastid	82.42	76.37
GSMUA_Achr2P01980_001	Banana	nucleus	68.05	72.84
VIT_14s0060g00060.t01	Wine grape	plastid	71.95	70.16
CDX80564	Canola	plastid	67.52	69.09
CDY05524	Canola	plastid	67.52	68.16
CDX87045	Canola	plastid	68.19	68.1
Bra020533.1-P	Field mustard	plastid	67.38	67.93
Bra009900.1-P	Field mustard	plastid	68.19	67.91
CDY66725	Canola	plastid	67.65	67.83
CDY61108	Canola	plastid	68.19	67.73
GSMUA_Achr11P...	Banana	plastid	70.07	67.44
Bra036582.1-P	Field mustard	plastid	67.25	67.43
AT5G26742.2	Thale cress	plastid	67.38	67.11
CDY19766	Canola	plastid	67.92	66.49
KRG90413	Soybean	plastid	65.37	66.17
Solyc08g042050.2.1	Tomato	plastid	66.17	66.09
KRG96641	Soybean	nucleus	67.79	65.5
KRH68372	Soybean	nucleus	67.79	65.5
KRH33703	Soybean	plastid	64.56	65.35
Zm00001d008884_P001	Maize	cytosol	14.09	61.05
Zm00001d030797_P001	Maize	mitochondrion	15.7	56.25
Zm00001d048578_P001	Maize	cytosol	15.97	50.85
Zm00001d032793_P001	Maize	cytosol	3.76	44.44
Zm00001d031050_P002	Maize	mitochondrion	35.84	43.7
Zm00001d041480_P001	Maize	mitochondrion	34.9	43.41
Zm00001d018787_P001	Maize	mitochondrion	35.03	42.86
Zm00001d033226_P001	Maize	cytosol	6.58	39.2
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	12.89	38.4
Zm00001d006160_P001	Maize	nucleus	32.08	33.95
Zm00001d021196_P004	Maize	nucleus	32.21	33.95
Zm00001d031584_P001	Maize	cytosol	8.59	31.07
Zm00001d043739_P001	Maize	mitochondrion	8.59	30.77
Zm00001d050438_P002	Maize	extracellular	10.87	25.16
Zm00001d018375_P001	Maize	nucleus	17.05	24.28
Zm00001d024138_P001	Maize	plastid	8.99	23.76
Zm00001d035797_P001	Maize	mitochondrion	17.32	22.63
Zm00001d035226_P001	Maize	plasma membrane	9.66	20.69
Zm00001d049075_P001	Maize	extracellular, golgi	12.75	19.63
Zm00001d049254_P001	Maize	cytosol	4.97	19.37
Zm00001d046048_P001	Maize	cytosol	4.83	19.15
Zm00001d052036_P001	Maize	plastid	4.43	15.71

Protein Annotations

EntrezGene:100193526	MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	UniProt:A0A1D6GDY8
ProteinID:AQK61830.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0042254	GO:GO:0046872	InterPro:GUCT	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	PFscan:PS50158	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756	UniParc:UPI0002217A9A	EnsemblPlantsGene:Zm00001d012922
EnsemblPlants:Zm00001d012922_P003	EnsemblPlants:Zm00001d012922_T003	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

RNA helicase3 RNA helicase3

Coordinates

chr5:+:1978807..1993142

Molecular Weight (calculated)

80388.7 Da

IEP (calculated)

6.799

GRAVY (calculated)

-0.358

Length

745 amino acids

Sequence
(BLAST)

001: MASLVTLPAI AFSNPATASG AVRLRAAAFR CWALRRRGWA VAAAVASPNS VLSEHAFKRL QLGSDDEDEE GPYGSDADEG FQGDEEELAI ARLGLPDELV
101: ATLEKRGITH LFPIQRAVLI PALGGRDLIA RAKTGTGKTL AFGIPMIKQL MEQDDGRSTR RGRTPRVLVL APTRELAKQV EKEIKESAPK LGTVCVYGGV
201: SYNVQQNALS RGVDVVVGTP GRIIDLINGG SLQLGEVQYL VLDEADQMLA VGFEEDVETI LQQLPADRQS MLFSATMPSW VKKLSRRYLN NPLTIDLVGD
301: QDEKLAEGIK LHAIPLTATS KRTILSDLIT VYAKGGKTIV FTRTKKDADE VSLALTTSIA SEALHGDISQ HQRERTLNGF RQGKFTVLVA TDVAARGLDI
401: PNVDLIIHYE LPNDPETFVH RSGRTGRAGK AGTAILMFTS SQKRTVMSLE RDVGCKFEFI SPPSIEEVLE SSAEHVIATL RGVHPESTQY FLGAAEKLTE
501: ELGPHALASA LAHLSGFSQP PSSRSLISYE QGWVTLQLTR EPGYGRGFFS PRSVTGFLSD VCSAAADEVG KIYITADENV QGAVFDLPEE IAKDLLTMEV
601: PPGNTLTKIS KLPALQDDSP ATDSYGRFSN DRGSRNRRSR GGGASRGRGG WDTDSEDRYR RGGRSLRSDN DSWSDDDWSG GGRKSNRSSS SFGGRSSSYG
701: SRGSPSPSFG VRSSSLGGRE SSRSFSGACF NCGESGHRAS DCPNK

Best Arabidopsis Sequence Match ( AT5G26742.2 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RERSFGGSCF ICGKSGHRAT DCPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.