Factsheet for Zm00001d033226_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008884_P001	Maize	cytosol	36.0	26.16
Zm00001d032793_P001	Maize	cytosol	12.8	25.4
Zm00001d030797_P001	Maize	mitochondrion	37.6	22.6
Zm00001d043739_P001	Maize	mitochondrion	35.2	21.15
Zm00001d048578_P001	Maize	cytosol	38.4	20.51
Zm00001d031584_P001	Maize	cytosol	33.6	20.39
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	35.2	17.6
Zm00001d035797_P001	Maize	mitochondrion	36.8	8.07
Zm00001d018787_P001	Maize	mitochondrion	38.4	7.88
Zm00001d031050_P002	Maize	mitochondrion	36.8	7.53
Zm00001d041480_P001	Maize	mitochondrion	36.0	7.51
Zm00001d052036_P001	Maize	plastid	12.0	7.14
Zm00001d006160_P001	Maize	nucleus	38.4	6.82
Zm00001d021196_P004	Maize	nucleus	37.6	6.65
Zm00001d012922_P003	Maize	plastid	39.2	6.58
Zm00001d034721_P002	Maize	plastid	38.4	6.33
Zm00001d018375_P001	Maize	nucleus	23.2	5.54
Zm00001d049075_P001	Maize	extracellular, golgi	15.2	3.93
Zm00001d024138_P001	Maize	plastid	7.2	3.19
Zm00001d050438_P002	Maize	extracellular	6.4	2.48
Zm00001d035226_P001	Maize	plasma membrane	3.2	1.15
Zm00001d049254_P001	Maize	cytosol	0.8	0.52
Zm00001d046048_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d033226_P001	EnsemblPlants:Zm00001d033226_T001	EnsemblPlantsGene:Zm00001d033226	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:Helicase_ATP-bd	InterPro:IPR014001
InterPro:P-loop_NTPase	PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	PFAM:PF00270	PFscan:PS51192	ProteinID:ONM07020.1
SUPFAM:SSF52540	UniParc:UPI00022145A8	UniProt:A0A1D6KX31	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1:-:255204711..255207320

Molecular Weight (calculated)

13698.4 Da

IEP (calculated)

4.716

GRAVY (calculated)

-0.314

Length

125 amino acids

Sequence
(BLAST)

001: MAATDVAARG LEQGDGPIVL IPAPTRELAV QIQEESTKFG SYSRTRSTCV YGGAPKGPQI RGLRRGVEIV IATPGRLIDM LEAGHTNLRR VTYLVLDEAD
101: QMLDMGNLKK LAAQSQTDDE DVWWE

Best Arabidopsis Sequence Match ( AT5G63120.1 )
(BLAST)

001: MSSYDRRFAD PNSYRQRSGA PVGSSQPMDP SAAPYNPRYT GGGGGYGPSP VMAGDNSGYN RYPSFQPPSG GFSVGRGGGR GGYGQYGDRN GGGNWGGGGG
101: RGGSSKRELD SVSLPKQNFG NLVHFEKNFY VESPTVQAMT EQDVAMYRTE RDISVEGRDV PKPMKMFQDA NFPDNILEAI AKLGFTEPTP IQAQGWPMAL
201: KGRDLIGIAE TGSGKTLAYL LPALVHVSAQ PRLGQDDGPI VLILAPTREL AVQIQEESRK FGLRSGVRST CIYGGAPKGP QIRDLRRGVE IVIATPGRLI
301: DMLECQHTNL KRVTYLVLDE ADRMLDMGFE PQIRKIVSQI RPDRQTLLWS ATWPREVETL ARQFLRDPYK AIIGSTDLKA NQSINQVIEI VPTPEKYNRL
401: LTLLKQLMDG SKILIFVETK RGCDQVTRQL RMDGWPALAI HGDKTQSERD RVLAEFKSGR SPIMTATDVA ARGLVSSGIR EKST

Arabidopsis Description

RH30DEAD-box ATP-dependent RNA helicase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4R3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.