Factsheet for Zm00001d048578_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008884_P001	Maize	cytosol	70.51	95.93
Zm00001d030797_P001	Maize	mitochondrion	76.07	85.58
Os07t0143700-01	Rice	plastid	73.5	52.28
KRH14557	Soybean	mitochondrion	60.26	43.65
Zm00001d033226_P001	Maize	cytosol	20.51	38.4
HORVU2Hr1G060640.15	Barley	cytosol	72.65	31.84
Zm00001d032793_P001	Maize	cytosol	8.55	31.75
Zm00001d018787_P001	Maize	mitochondrion	82.48	31.69
EER97966	Sorghum	mitochondrion	80.34	31.23
PGSC0003DMT400074131	Potato	plastid	62.39	29.32
TraesCS2B01G273300.1	Wheat	plastid	76.92	29.08
TraesCS2A01G253700.1	Wheat	mitochondrion	76.5	28.92
TraesCS2D01G254200.1	Wheat	mitochondrion	76.07	28.76
CDY37406	Canola	mitochondrion	60.68	27.84
CDY46329	Canola	mitochondrion	61.97	26.41
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	28.21	26.4
KRH73571	Soybean	nucleus	60.68	23.87
CDY37408	Canola	mitochondrion	60.68	23.63
Bra031349.1-P	Field mustard	mitochondrion	60.68	23.59
CDY10634	Canola	mitochondrion	60.68	23.59
Bra023836.1-P	Field mustard	mitochondrion	61.54	23.34
Solyc07g044760.2.1	Tomato	plastid	62.82	23.33
VIT_12s0142g00670.t01	Wine grape	plastid	66.24	23.27
AT3G22310.1	Thale cress	mitochondrion	60.26	23.11
AT3G22330.1	Thale cress	mitochondrion	60.68	23.05
Solyc12g006320.1.1	Tomato	plastid	62.39	22.71
Zm00001d043739_P001	Maize	mitochondrion	20.09	22.6
Zm00001d031050_P002	Maize	mitochondrion	58.55	22.42
KRH45952	Soybean	mitochondrion	57.69	22.31
Zm00001d041480_P001	Maize	mitochondrion	56.84	22.2
KRG99044	Soybean	mitochondrion	58.55	21.31
Zm00001d031584_P001	Maize	cytosol	18.38	20.87
Zm00001d012922_P003	Maize	plastid	50.85	15.97
Zm00001d034721_P002	Maize	plastid	50.43	15.57
Zm00001d052036_P001	Maize	plastid	12.39	13.81
Zm00001d035797_P001	Maize	mitochondrion	32.48	13.33
Zm00001d021196_P004	Maize	nucleus	38.46	12.73
CDY46330	Canola	nucleus	15.81	12.67
Zm00001d006160_P001	Maize	nucleus	37.61	12.5
Zm00001d018375_P001	Maize	nucleus	24.36	10.9
Zm00001d049075_P001	Maize	extracellular, golgi	19.66	9.5
Zm00001d050438_P002	Maize	extracellular	12.82	9.32
Zm00001d035226_P001	Maize	plasma membrane	9.4	6.32
Zm00001d024138_P001	Maize	plastid	6.41	5.32
KRH14556	Soybean	cytosol	0.85	0.7
Zm00001d046048_P001	Maize	cytosol	0.43	0.53
Zm00001d049254_P001	Maize	cytosol	0.43	0.52

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6PMY0	ProteinID:AQK48218.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFscan:PS51192
PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI000844CD18	EnsemblPlantsGene:Zm00001d048578
EnsemblPlants:Zm00001d048578_P001	EnsemblPlants:Zm00001d048578_T001	SEG:seg	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 53

Coordinates

chr4:-:50276..52356

Molecular Weight (calculated)

25778.6 Da

IEP (calculated)

9.588

GRAVY (calculated)

-0.105

Length

234 amino acids

Sequence
(BLAST)

001: MPGARGKVAG AAEAGVPLFY APWGSGPPRR RGPVPRAVLE PAMQGKDMIG RARTGTGKTL AFGIPIMDKI LSYNEKNGFG RNPLAIILAP TRELARQVEK
101: EFRESAPLDT LCVYGGVPIN QQMRALKYGA DIVVGTPGRV IDLLRRGVLN LSQIQFVVLD EADQMLAVGF DEDVEVIMEQ LPQNRQSMLF SATMPSWIRK
201: NSNKYLKDPV IIDLESMAMV PSHYSAFYLC SRLQ

Best Arabidopsis Sequence Match ( AT3G22310.1 )
(BLAST)

001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
601: FGSNDGKRSY

Arabidopsis Description

RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.