Factsheet for HORVU2Hr1G060640.15

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008884_P001	Maize	cytosol	29.21	90.7
TraesCS2B01G273300.1	Wheat	plastid	91.95	79.32
TraesCS2A01G253700.1	Wheat	mitochondrion	91.95	79.32
TraesCS2D01G254200.1	Wheat	mitochondrion	91.57	79.0
Zm00001d030797_P001	Maize	mitochondrion	30.52	78.37
Zm00001d048578_P001	Maize	cytosol	31.84	72.65
EER97966	Sorghum	mitochondrion	74.34	65.95
Zm00001d018787_P001	Maize	mitochondrion	74.91	65.68
Os07t0143700-01	Rice	plastid	37.45	60.79
CDY46330	Canola	nucleus	32.77	59.93
PGSC0003DMT400074131	Potato	plastid	50.0	53.61
CDY46329	Canola	mitochondrion	52.62	51.18
CDY37406	Canola	mitochondrion	48.13	50.39
AT3G22330.1	Thale cress	mitochondrion	57.68	50.0
VIT_12s0142g00670.t01	Wine grape	plastid	62.36	50.0
Bra023836.1-P	Field mustard	mitochondrion	57.3	49.59
Solyc07g044760.2.1	Tomato	plastid	57.12	48.41
KRH45952	Soybean	mitochondrion	54.68	48.26
HORVU5Hr1G011460.3	Barley	mitochondrion	56.37	48.16
KRH73571	Soybean	nucleus	53.56	48.07
CDY10634	Canola	mitochondrion	54.12	48.01
KRH14557	Soybean	mitochondrion	29.03	47.99
CDY37408	Canola	mitochondrion	53.93	47.92
AT3G22310.1	Thale cress	mitochondrion	54.68	47.87
Bra031349.1-P	Field mustard	mitochondrion	53.93	47.84
KRG99044	Soybean	mitochondrion	57.49	47.74
Solyc12g006320.1.1	Tomato	plastid	55.62	46.19
KRH14556	Soybean	cytosol	24.53	45.64
HORVU5Hr1G080170.2	Barley	nucleus	32.02	26.39
HORVU6Hr1G085490.2	Barley	mitochondrion	18.73	17.42
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	4.49	16.11

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	UniProt:A0A287I5C5	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:HORVU2Hr1G060640	EnsemblPlants:HORVU2Hr1G060640.15	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI000B46C28E	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:405142090..405145940

Molecular Weight (calculated)

57114.2 Da

IEP (calculated)

9.202

GRAVY (calculated)

-0.513

Length

534 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXLYKELND ISCEQRAVLE PAMQGKDMIG RARTGTGKTL AFGIPIMDRI LRHNEKNGSG RNPLAIILAP TRELARQVEK EFRESAPLDT
101: LCVYGGVPIS QQMRTLNYGV DVVVGTPGRV IDLLRRGVLN LSEIQFVVLD EADQMLAVGF DEAVEVIMEK LPQNRQSMLF SATMPSWIRK LTNQYLKDPV
201: IIDLVGDSEQ KLPEGISLYS IVSENYGKSS ILGPLIKEHA DGGKCIVFTQ TKREADRLAY AMGRSYACQA LHGDISQNQR ERTLSGFRDG RFNILVATDV
301: AARGLDIPNV DLVVHYEIPN SSELFVHRSG RTARAGKKGI AILMYTYEQS RTVKGIEQDI GCRFTELPKV AATDEAAELF NVMRDTRSRS VGTRRSGGSS
401: FSHYGGFGER HSRGFGEFDS FGGTPNRAGW SADAGSRYRG GFGDSRQSSQ PSNGFGRSSG FGDSRRGPQT SNGFGRSSFN RSGGFGDFGE GNSRGGNSEF
501: RFTRRSDDSD PSRYGRSSNG FGTSDFGRPG SSKD

Best Arabidopsis Sequence Match ( AT3G22310.1 )
(BLAST)

001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
601: FGSNDGKRSY

Arabidopsis Description

RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.