Factsheet for Os07t0143700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008884_P001	Maize	cytosol	46.2	88.37
Zm00001d030797_P001	Maize	mitochondrion	50.76	80.29
Zm00001d048578_P001	Maize	cytosol	52.28	73.5
KRH14557	Soybean	mitochondrion	58.05	59.13
TraesCS2D01G254200.1	Wheat	mitochondrion	83.89	44.59
TraesCS2A01G253700.1	Wheat	mitochondrion	83.89	44.59
TraesCS2B01G273300.1	Wheat	plastid	82.98	44.1
EER97966	Sorghum	mitochondrion	78.72	43.02
Zm00001d018787_P001	Maize	mitochondrion	79.33	42.86
PGSC0003DMT400074131	Potato	plastid	58.36	38.55
HORVU2Hr1G060640.15	Barley	cytosol	60.79	37.45
CDY37406	Canola	mitochondrion	58.05	37.45
CDY46329	Canola	mitochondrion	58.05	34.79
VIT_12s0142g00670.t01	Wine grape	plastid	65.05	32.13
KRH73571	Soybean	nucleus	57.75	31.93
CDY37408	Canola	mitochondrion	58.05	31.78
CDY10634	Canola	mitochondrion	58.05	31.73
Bra031349.1-P	Field mustard	mitochondrion	57.75	31.56
AT3G22310.1	Thale cress	mitochondrion	57.75	31.15
Os12t0611200-01	Rice	nucleus	59.27	31.05
Bra023836.1-P	Field mustard	mitochondrion	57.75	30.79
KRH45952	Soybean	mitochondrion	56.53	30.74
Solyc07g044760.2.1	Tomato	plastid	58.66	30.63
AT3G22330.1	Thale cress	mitochondrion	56.23	30.03
Solyc12g006320.1.1	Tomato	plastid	58.36	29.86
KRG99044	Soybean	mitochondrion	57.45	29.39
Os03t0827700-01	Rice	nucleus	45.9	20.89
CDY46330	Canola	nucleus	16.41	18.49
Os09t0520700-01	Rice	nucleus, plastid	31.91	15.09
Os02t0795900-01	Rice	nucleus	22.19	14.01
KRH14556	Soybean	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0P0X2G8	ProteinID:BAT00031.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlantsGene:Os07g0143700	EnsemblPlants:Os07t0143700-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFscan:PS51192
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SUPFAM:SSF52540
UniParc:UPI000393B721	SEG:seg	:	:	:	:

Description

RNA helicase 53Similar to DEAD-Box RNA helicase-like protein. (Os07t0143700-01)

Coordinates

chr7:-:2225652..2231090

Molecular Weight (calculated)

35457.1 Da

IEP (calculated)

8.819

GRAVY (calculated)

-0.022

Length

329 amino acids

Sequence
(BLAST)

001: FSLLSRALCA ASSSPAAPRG RSLLAALLSP SASPLDPCRG PAAPEPPRRR AFHGSPSPLG FRSTPASWSS PEAGAAVGGD DGLEVARLGI SPWIVERLAA
101: RGITRLFPIQ RAVLDPAMQG KDMIGRARTG TGKTLAFGIP IMDRILRHNE KNGSGRNPLA IILAPTRELA RQVEKEFKES APLDSLCVYG GVPISHQMRA
201: LNYGVDVVVG TPGRIIDLLR RGVLNLSEIQ FVVLDEADQM LAVGFDEDVE VIMENLPQNR QSMLFSATMP SWIRKITSKY LKDPIIIDLV GDEDQKLPEG
301: ISLYSIASEH YGKPSILGPL IKVSTLLNV

Best Arabidopsis Sequence Match ( AT3G22310.2 )
(BLAST)

001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGGGSYGGS GGSSSRYSGG SDRSSGFGSF GSGGSSGGFG SDRSSQSSGR SSFGGFGSND GKRSY

Arabidopsis Description

RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.