CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008884_P001	Maize	cytosol	38.7	72.67
Zm00001d030797_P001	Maize	mitochondrion	41.8	64.9
Zm00001d048578_P001	Maize	cytosol	43.65	60.26
Os07t0143700-01	Rice	plastid	59.13	58.05
KRH73571	Soybean	nucleus	95.67	51.93
KRH45952	Soybean	mitochondrion	73.37	39.17
GSMUA_Achr7P00980_001	Banana	mitochondrion	60.68	37.84
KRG99044	Soybean	mitochondrion	73.99	37.17
EER97966	Sorghum	mitochondrion	61.92	33.22
Zm00001d018787_P001	Maize	mitochondrion	60.99	32.35
TraesCS5B01G052100.1	Wheat	mitochondrion	59.44	32.16
TraesCS5D01G057800.1	Wheat	mitochondrion	59.44	31.95
HORVU5Hr1G011460.3	Barley	mitochondrion	60.68	31.36
Zm00001d041480_P001	Maize	mitochondrion	57.89	31.22
Os12t0611200-01	Rice	nucleus	60.68	31.21
Zm00001d031050_P002	Maize	mitochondrion	58.82	31.1
EES17375	Sorghum	mitochondrion	59.44	31.07
TraesCS5A01G047300.2	Wheat	mitochondrion	59.13	31.01
TraesCS2A01G253700.1	Wheat	mitochondrion	59.13	30.86
TraesCS2B01G273300.1	Wheat	plastid	58.82	30.69
TraesCS2D01G254200.1	Wheat	mitochondrion	58.82	30.69
HORVU2Hr1G060640.15	Barley	cytosol	47.99	29.03
GSMUA_Achr2P13080_001	Banana	plastid	65.63	28.73
KRH15837	Soybean	nucleus	14.86	25.67
KRH68372	Soybean	nucleus	49.23	20.62
KRH33703	Soybean	plastid	46.75	20.52
KRG96641	Soybean	nucleus	48.92	20.49
KRG90413	Soybean	plastid	46.44	20.38
KRH42587	Soybean	nucleus	18.89	19.87
GSMUA_Achr2P13070_001	Banana	cytosol	66.56	18.19
KRH35418	Soybean	endoplasmic reticulum	34.67	16.07
KRG91400	Soybean	nucleus	34.06	15.87
KRH15846	Soybean	nucleus	23.53	13.62
KRH15843	Soybean	cytosol	15.17	12.93
KRH44787	Soybean	nucleus	23.84	12.48
KRH14556	Soybean	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0G8L4	EMBL:ACUP02008505	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_14G0334001
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH14557	ProteinID:KRH14557	ProteinID:KRH14557.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFscan:PS51192	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI0006ED7EC3	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:2426268..2427873

Molecular Weight (calculated)

35324.7 Da

IEP (calculated)

7.954

GRAVY (calculated)

-0.094

Length

323 amino acids

Sequence
(BLAST)

001: MLTAILRRTC STLSRRGFPA ALISASTAGN HFRPPSAAFI SRTFHSNTGP LNFRSSSCHR AEYAVDDFPY EEGSKGNAAD EGLEIAKLGI SEDIVSALAK
101: KGITKLFPIQ RAVLEPAMQG RDMIGRARTG TGKTLAFGIP IMDKIIQFNA KHGRGRDPLA LVLAPTRELA RQVETEFCES APNLDTICVY GGTPISRQMR
201: ELDYGVDIAV GTPGRIIDLL NRGALNLKDV QFVVLDEADQ MLQVGFQEDV EKILERLPPK RQTLMFSATM PSWIKQISRN YLNNPLTIDL VGDSDQKLAD
301: GISLYSIATD LYVKAGILAP LIT

Best Arabidopsis Sequence Match ( AT3G22310.1 )
(BLAST)

001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
601: FGSNDGKRSY

Arabidopsis Description

RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.