CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42587	Soybean	nucleus	80.75	49.19
TraesCS3A01G243600.1	Wheat	cytosol	48.13	41.28
KRH15843	Soybean	cytosol	62.57	30.87
KRH15846	Soybean	nucleus	83.42	27.96
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	20.32	25.5
KRH44787	Soybean	nucleus	83.42	25.28
Zm00001d052036_P001	Maize	plastid	27.27	24.29
VIT_10s0003g04000.t01	Wine grape	nucleus	55.08	19.96
Solyc07g005890.2.1	Tomato	nucleus	54.55	19.88
PGSC0003DMT400059139	Potato	cytosol	54.55	19.88
GSMUA_Achr10P...	Banana	cytosol	52.41	19.14
AT4G15850.1	Thale cress	nucleus	52.41	18.77
Bra033519.1-P	Field mustard	cytosol	51.87	18.27
CDY22890	Canola	cytosol	51.87	18.27
TraesCS6D01G341300.1	Wheat	nucleus	51.34	18.25
TraesCS6A01G358500.1	Wheat	nucleus	51.34	18.25
CDY44172	Canola	cytosol	51.34	18.08
TraesCS6B01G391200.1	Wheat	nucleus	50.8	18.06
Os02t0795900-01	Rice	nucleus	50.27	18.04
EES07679	Sorghum	nucleus	49.2	17.73
Zm00001d018375_P001	Maize	nucleus	49.2	17.59
HORVU6Hr1G085490.2	Barley	mitochondrion	51.34	16.72
KRH14557	Soybean	mitochondrion	25.67	14.86
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	54.55	13.28
TraesCS3D01G247800.1	Wheat	nucleus	32.09	13.07
KRH73571	Soybean	nucleus	26.2	8.24
KRH45952	Soybean	mitochondrion	26.2	8.1
KRG99044	Soybean	mitochondrion	26.74	7.78
KRG91400	Soybean	nucleus	24.6	6.64
KRH35418	Soybean	endoplasmic reticulum	23.53	6.31
KRG90413	Soybean	plastid	24.6	6.25
KRH33703	Soybean	plastid	24.6	6.25
KRG96641	Soybean	nucleus	25.67	6.23
KRH68372	Soybean	nucleus	25.13	6.1
KRH14556	Soybean	cytosol	0.53	0.35

Protein Annotations

EMBL:ACUP02008662	EnsemblPlants:KRH15837	EnsemblPlantsGene:GLYMA_14G114300	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:Helicase_ATP-bd	InterPro:IPR014001
InterPro:P-loop_NTPase	PANTHER:PTHR24031	PANTHER:PTHR24031:SF68	PFAM:PF00270	PFscan:PS51192	ProteinID:KRH15837
ProteinID:KRH15837.1	SUPFAM:SSF52540	UniParc:UPI0002960B9C	UniProt:K7M699	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr14:-:13609649..13610366

Molecular Weight (calculated)

20966.6 Da

IEP (calculated)

5.255

GRAVY (calculated)

0.067

Length

187 amino acids

Sequence
(BLAST)

001: MEEEKQQPSV AVVPWMRHPV DITRCQELPV CSVPLMKRRL QSVLEENMGI SKLFPVQVTL WQETIGPGDF EQDLCIKSPI GIPTRDLALQ VKLVFDAFAS
101: LLGLHICLAT GQSLLRHELS SLIYLPGEDD GPNPGFLSPL WFQSKVDILV ATPERLVDHV NKLSLKHLCY VVVDEADRFK PASTNIL

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.