CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45952	Soybean	mitochondrion	84.29	89.59
KRH14557	Soybean	mitochondrion	37.17	73.99
Zm00001d008884_P001	Maize	cytosol	18.97	70.93
KRH73571	Soybean	nucleus	61.74	66.72
Zm00001d030797_P001	Maize	mitochondrion	20.84	64.42
CDY46330	Canola	nucleus	28.62	63.01
CDY46329	Canola	mitochondrion	53.5	62.66
CDY37406	Canola	mitochondrion	49.14	61.96
Bra023836.1-P	Field mustard	mitochondrion	58.48	60.94
AT3G22330.1	Thale cress	mitochondrion	57.7	60.23
CDY10634	Canola	mitochondrion	55.68	59.47
Bra031349.1-P	Field mustard	mitochondrion	55.52	59.3
CDY37408	Canola	mitochondrion	55.21	59.07
AT3G22310.1	Thale cress	mitochondrion	55.68	58.69
Zm00001d048578_P001	Maize	cytosol	21.31	58.55
PGSC0003DMT400074131	Potato	plastid	44.79	57.83
HORVU2Hr1G060640.15	Barley	cytosol	47.74	57.49
Os07t0143700-01	Rice	plastid	29.39	57.45
KRH14556	Soybean	cytosol	25.35	56.79
Zm00001d041480_P001	Maize	mitochondrion	52.72	56.59
EES17375	Sorghum	mitochondrion	53.97	56.15
EER97966	Sorghum	mitochondrion	52.26	55.81
VIT_12s0142g00670.t01	Wine grape	plastid	57.7	55.71
Zm00001d031050_P002	Maize	mitochondrion	52.88	55.65
Solyc07g044760.2.1	Tomato	plastid	54.43	55.56
TraesCS2B01G273300.1	Wheat	plastid	53.19	55.25
TraesCS2A01G253700.1	Wheat	mitochondrion	52.88	54.93
TraesCS2D01G254200.1	Wheat	mitochondrion	52.41	54.44
Zm00001d018787_P001	Maize	mitochondrion	51.01	53.86
Os12t0611200-01	Rice	nucleus	52.57	53.82
TraesCS5D01G057800.1	Wheat	mitochondrion	50.23	53.74
TraesCS5B01G052100.1	Wheat	mitochondrion	49.77	53.6
GSMUA_Achr7P00980_001	Banana	mitochondrion	42.77	53.09
TraesCS5A01G047300.2	Wheat	mitochondrion	50.86	53.08
HORVU5Hr1G011460.3	Barley	mitochondrion	50.7	52.16
Solyc12g006320.1.1	Tomato	plastid	50.7	50.7
GSMUA_Achr2P13080_001	Banana	plastid	56.92	49.59
KRG90413	Soybean	plastid	42.15	36.82
KRH33703	Soybean	plastid	42.15	36.82
KRH68372	Soybean	nucleus	43.39	36.19
KRG96641	Soybean	nucleus	43.08	35.93
GSMUA_Achr2P13070_001	Banana	cytosol	58.16	31.64
KRH35418	Soybean	endoplasmic reticulum	29.55	27.26
KRG91400	Soybean	nucleus	29.24	27.13
KRH15837	Soybean	nucleus	7.78	26.74
KRH42587	Soybean	nucleus	11.66	24.43
KRH15843	Soybean	cytosol	13.84	23.48
KRH15846	Soybean	nucleus	17.88	20.61
KRH44787	Soybean	nucleus	18.66	19.45

Protein Annotations

EntrezGene:100802553	MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	EMBL:ACUP02010956	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_18G116700
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1N132	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:KRG99044	ProteinID:KRG99044	ProteinID:KRG99044.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000233DFEF	SEG:seg

Description

hypothetical protein

Coordinates

chr18:-:14268329..14275454

Molecular Weight (calculated)

68215.1 Da

IEP (calculated)

9.998

GRAVY (calculated)

-0.357

Length

643 amino acids

Sequence
(BLAST)

001: MTSVILRRSS SVISRRFFAA LASVEPLPRR FPADRHGVSG NGARTFHANP GPLNFRASLV PRAAQFAIER DYSNYEEVSN ANSDEGLEIA KLGIAPEIVD
101: ALARKGIAKL FPIQRAVLEP AMQGRDMIGR ARTGTGKTLA FGIPILDRIT QFNAKHGQGR NPLALVLAPT RELARQVEKE FNEAAPNLAT ICLYGGMPIQ
201: QQMRQLNYGV DIAVGTPGRI IDLLNRGALN LKDVKFVVLD EADQMLQVGF QEAVEKILEG LSPNRQTLMF SATMPSWIKN ITRNYLNNPL TIDLVGDSDQ
301: KLADGISLYS IVSDSYTKAG ILAPLITEHA NGGKCIVFTQ TKRDADRLSY VMAKSLRCEA LHGDISQTQR ERTLAGFRNN NFNVLVATDV ASRGLDIPNV
401: DLVIHYDLPN SSEIFVHRSG RTGRAGKKGS AILFFTQDQF RAVQTIERDV GCKFTELPKI DAPSGSAEMF SGMAGGRFGS MRDRQSGGTG FGRSPGFGRS
501: GSYGNSGFGQ SSYDGFGSGQ APQFGGNSRP GGNSRPSGFG SSGQSSGFGN FGSGQSGGFG SSGQSGGFGS SGQSGGFGNF GSGQSGSFGN FGSGQSGGFG
601: NFGSGQSGAF GGRKSNQSST FGNSHGSGFS AFGNDPNNDS YNR

Best Arabidopsis Sequence Match ( AT3G22330.1 )
(BLAST)

001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY

Arabidopsis Description

RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.