Factsheet for Solyc12g006320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074131	Potato	plastid	74.34	95.98
Zm00001d008884_P001	Maize	cytosol	20.06	75.0
Solyc07g044760.2.1	Tomato	plastid	71.38	72.86
Zm00001d030797_P001	Maize	mitochondrion	21.93	67.79
Zm00001d048578_P001	Maize	cytosol	22.71	62.39
CDY46330	Canola	nucleus	27.22	59.93
Os07t0143700-01	Rice	plastid	29.86	58.36
CDY46329	Canola	mitochondrion	48.99	57.38
CDY37406	Canola	mitochondrion	45.41	57.25
KRH73571	Soybean	nucleus	52.41	56.64
HORVU2Hr1G060640.15	Barley	cytosol	46.19	55.62
VIT_12s0142g00670.t01	Wine grape	plastid	55.99	54.05
CDY37408	Canola	mitochondrion	50.23	53.74
CDY10634	Canola	mitochondrion	50.23	53.65
Bra031349.1-P	Field mustard	mitochondrion	50.23	53.65
Bra023836.1-P	Field mustard	mitochondrion	51.48	53.65
AT3G22330.1	Thale cress	mitochondrion	51.17	53.41
EES17375	Sorghum	mitochondrion	51.17	53.24
Zm00001d031050_P002	Maize	mitochondrion	50.54	53.19
EER97966	Sorghum	mitochondrion	49.77	53.16
Zm00001d041480_P001	Maize	mitochondrion	49.46	53.09
TraesCS5B01G052100.1	Wheat	mitochondrion	48.99	52.76
TraesCS5D01G057800.1	Wheat	mitochondrion	49.14	52.58
GSMUA_Achr7P00980_001	Banana	mitochondrion	42.3	52.51
KRH45952	Soybean	mitochondrion	49.14	52.23
AT3G22310.1	Thale cress	mitochondrion	49.46	52.13
TraesCS5A01G047300.2	Wheat	mitochondrion	49.92	52.11
Zm00001d018787_P001	Maize	mitochondrion	49.3	52.05
TraesCS2B01G273300.1	Wheat	plastid	49.92	51.86
TraesCS2A01G253700.1	Wheat	mitochondrion	49.92	51.86
TraesCS2D01G254200.1	Wheat	mitochondrion	49.77	51.7
HORVU5Hr1G011460.3	Barley	mitochondrion	50.08	51.52
KRG99044	Soybean	mitochondrion	50.7	50.7
Os12t0611200-01	Rice	nucleus	48.99	50.16
GSMUA_Achr2P13080_001	Banana	plastid	52.26	45.53
Solyc08g042050.2.1	Tomato	plastid	41.52	35.79
Solyc06g035450.2.1	Tomato	nucleus	19.28	30.92
GSMUA_Achr2P13070_001	Banana	cytosol	55.05	29.95
Solyc03g007010.2.1	Tomato	nucleus	30.02	28.3
Solyc07g005890.2.1	Tomato	nucleus	18.97	23.78

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4DBG9	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc12g006320.1	EnsemblPlants:Solyc12g006320.1.1
UniParc:UPI000276A7B8	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:841803..847655

Molecular Weight (calculated)

69767.1 Da

IEP (calculated)

10.084

GRAVY (calculated)

-0.402

Length

643 amino acids

Sequence
(BLAST)

001: MAFLPCPLRY SKMNSLFLLR KSSSSLTSKR VSINSISHIF SDKFSPRNAL RVPQVQSFTT SLTVSAPPMN RVDGKFGYSV KGFHGGGCCL QAATATAMAM
101: VELEEDCEEG LEISKLGISE EIVSALAQRG ITSLFPIQRA VLEPAMQGSD MIGRARTGTG KTLAFGIPIM DKIIRFNRKK GRGRNPLALI LAPTRELARQ
201: VDKEFYESAP ILDTLCVYGG VPISRQMSTL DRGTDIVVGT PGRIIDLLKR GSLNLSDIQF VVLDEADQML NVGFAEDVET ILENIRQKHQ TMMFSATMPS
301: WILKLTKKFL KKPIHVDLVG DSDQKLADGI SLYSIACEMR QKPAVLGPLI SEHAKGGKCI VFTQTKRDAD RLAGAMQRTL RCEALHGDIS QSQRERTLSG
401: FRQGQFNVLV ATDVAARGLD VPNVDLVIHY ELPNNSEIFV HRSGRTGRAG KKGSAILMHS SKQHRDVKGI EHDAGCRFTE LPTIKVEAGA VEMYSEMGKD
501: DGRFGSSGGG TMRSRSSDFG GGRSGGYGNK SSKFGREVSS SSVRTGGYSA TGSGRSRGGF SGPSSGRSGK FGGGSGDTRG SKRLGGFRNF GGFGSSKSSN
601: RSNNFAEEFD SGRSRRFGDS DHDRNNRSSR FDVFGDDNDS GEW

Best Arabidopsis Sequence Match ( AT3G22330.1 )
(BLAST)

001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY

Arabidopsis Description

RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.