Factsheet for Os12t0611200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 18022940
nucleus: 23777608

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17375	Sorghum	mitochondrion	79.62	80.91
Zm00001d031050_P002	Maize	mitochondrion	78.34	80.52
Zm00001d041480_P001	Maize	mitochondrion	75.32	78.96
TraesCS5B01G052100.1	Wheat	mitochondrion	71.97	75.71
TraesCS5D01G057800.1	Wheat	mitochondrion	71.66	74.88
TraesCS5A01G047300.2	Wheat	mitochondrion	73.09	74.51
HORVU5Hr1G011460.3	Barley	mitochondrion	73.41	73.76
KRH14557	Soybean	mitochondrion	31.21	60.68
CDY46330	Canola	nucleus	27.87	59.93
Os07t0143700-01	Rice	plastid	31.05	59.27
KRH73571	Soybean	nucleus	54.3	57.31
CDY37406	Canola	mitochondrion	46.02	56.67
PGSC0003DMT400074131	Potato	plastid	44.75	56.43
KRH45952	Soybean	mitochondrion	52.39	54.38
CDY46329	Canola	mitochondrion	47.45	54.28
Solyc07g044760.2.1	Tomato	plastid	54.3	54.13
GSMUA_Achr7P00980_001	Banana	mitochondrion	44.59	54.05
Bra031349.1-P	Field mustard	mitochondrion	51.59	53.82
CDY10634	Canola	mitochondrion	51.59	53.82
CDY37408	Canola	mitochondrion	51.43	53.74
Bra023836.1-P	Field mustard	mitochondrion	52.39	53.32
AT3G22310.1	Thale cress	mitochondrion	51.43	52.95
AT3G22330.1	Thale cress	mitochondrion	51.91	52.92
VIT_12s0142g00670.t01	Wine grape	plastid	56.05	52.85
KRG99044	Soybean	mitochondrion	53.82	52.57
KRH14556	Soybean	cytosol	23.25	50.87
Solyc12g006320.1.1	Tomato	plastid	50.16	48.99
GSMUA_Achr2P13080_001	Banana	plastid	56.85	48.37
Os03t0827700-01	Rice	nucleus	43.63	37.9
GSMUA_Achr2P13070_001	Banana	cytosol	59.55	31.64
Os09t0520700-01	Rice	nucleus, plastid	29.62	26.72
Os02t0795900-01	Rice	nucleus	17.52	21.11

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	EntrezGene:4352769	EMBL:AK287833	ProteinID:BAF30271.2	ProteinID:BAT18038.1
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os12g0611200	EnsemblPlants:Os12t0611200-01	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF296	UniProt:Q0ILZ4	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0000DD9F68	RefSeq:XP_015620393.1	SEG:seg	:	:	:

Description

RNA helicase 9RNA helicase. (Os12t0611200-01)

Coordinates

chr12:-:25828666..25832900

Molecular Weight (calculated)

65598.5 Da

IEP (calculated)

10.031

GRAVY (calculated)

-0.286

Length

628 amino acids

Sequence
(BLAST)

001: MYSILRRAAP LRRRAVSALA AAVLRREEAA AEVVVSRRAT IPAAWFHSSP AWLGFRETGA AGAAARPQYA ADEGLFYEED KRGAKAGGVA AGGAEEGLEV
101: AKLGISPKIV SQLASRGITK LFPIQRAVLE PAMQGKDMVG RAKTGTGKTL AFGIPILDAI IRHNEKNSPG KFPLAIVLAP TRELAKQVER EFSDSSNVET
201: ICVYGGTPIS QQIRQLNYGV DVVIGTPGRV IDLLKRGALN LSEVRFVVLD EADQMLSVGF DEDVETILDR VPPKRQTLMF SATMPTWIQR LTQKYLKNPV
301: TIDLVGEDDQ KLAEGISLYS IASEGHAKPA VLGELIKEHA KGGKCIVFTQ TKRDADRLSY TMGRSFQCQA LHGDITQAQR ERTLKGFREG HFNILIATDV
401: AARGLDIPNV DLVIHFELPN SSELFVHRSG RTGRAGKKGK AIVMHSYQQS RAIRMVENDV GCKFTELPKI NVEGSDLMSG GFDSFGGGGF GREGGGSYGR
501: RGSFGSSSSR GGGFGDSGFG RSGGGFGRSG GGGFGRSSGG GFGDSGFGRS GGGGFGDSGF GRSGGGGYGD SGFGSSGGGS GRSGFGRSGG FGDSGSGRFG
601: GGFGNSGSGS FGNFGGNNSG QSGGFGSS

Best Arabidopsis Sequence Match ( AT3G22330.1 )
(BLAST)

001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY

Arabidopsis Description

RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.