CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14557	Soybean	mitochondrion	51.93	95.67
KRH14556	Soybean	cytosol	42.52	88.15
Zm00001d008884_P001	Maize	cytosol	21.34	73.84
Zm00001d030797_P001	Maize	mitochondrion	23.03	65.87
CDY46330	Canola	nucleus	31.76	64.73
KRH45952	Soybean	mitochondrion	65.55	64.46
CDY46329	Canola	mitochondrion	58.66	63.57
CDY37406	Canola	mitochondrion	53.45	62.35
KRG99044	Soybean	mitochondrion	66.72	61.74
Zm00001d048578_P001	Maize	cytosol	23.87	60.68
PGSC0003DMT400074131	Potato	plastid	50.59	60.44
Bra023836.1-P	Field mustard	mitochondrion	60.84	58.67
AT3G22330.1	Thale cress	mitochondrion	60.67	58.6
Bra031349.1-P	Field mustard	mitochondrion	58.66	57.97
CDY10634	Canola	mitochondrion	58.66	57.97
CDY37408	Canola	mitochondrion	58.49	57.9
Os07t0143700-01	Rice	plastid	31.93	57.75
VIT_12s0142g00670.t01	Wine grape	plastid	63.87	57.06
Solyc07g044760.2.1	Tomato	plastid	60.0	56.67
AT3G22310.1	Thale cress	mitochondrion	57.65	56.23
EES17375	Sorghum	mitochondrion	57.31	55.18
Zm00001d031050_P002	Maize	mitochondrion	56.64	55.16
EER97966	Sorghum	mitochondrion	55.63	54.98
TraesCS5B01G052100.1	Wheat	mitochondrion	54.96	54.77
TraesCS5D01G057800.1	Wheat	mitochondrion	55.29	54.74
Os12t0611200-01	Rice	nucleus	57.31	54.3
Zm00001d041480_P001	Maize	mitochondrion	54.62	54.26
Zm00001d018787_P001	Maize	mitochondrion	54.96	53.69
HORVU2Hr1G060640.15	Barley	cytosol	48.07	53.56
GSMUA_Achr7P00980_001	Banana	mitochondrion	46.55	53.47
TraesCS5A01G047300.2	Wheat	mitochondrion	55.29	53.41
HORVU5Hr1G011460.3	Barley	mitochondrion	55.63	52.96
Solyc12g006320.1.1	Tomato	plastid	56.64	52.41
TraesCS2A01G253700.1	Wheat	mitochondrion	53.95	51.86
TraesCS2B01G273300.1	Wheat	plastid	53.45	51.37
TraesCS2D01G254200.1	Wheat	mitochondrion	53.28	51.21
GSMUA_Achr2P13080_001	Banana	plastid	59.16	47.7
KRH33703	Soybean	plastid	45.38	36.68
KRH68372	Soybean	nucleus	47.23	36.45
KRG90413	Soybean	plastid	44.71	36.14
KRG96641	Soybean	nucleus	46.39	35.8
GSMUA_Achr2P13070_001	Banana	cytosol	60.67	30.54
KRH35418	Soybean	endoplasmic reticulum	31.76	27.12
KRG91400	Soybean	nucleus	31.26	26.84
KRH15837	Soybean	nucleus	8.24	26.2
KRH42587	Soybean	nucleus	12.61	24.43
KRH15843	Soybean	cytosol	14.96	23.48
KRH15846	Soybean	nucleus	19.83	21.15
KRH44787	Soybean	nucleus	20.17	19.45

Protein Annotations

EntrezGene:100778436	MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	UniProt:A0A0R4J2R4	EMBL:ACUP02001284	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_02G281200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:KRH73571	ProteinID:KRH73571	ProteinID:KRH73571.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0001B83737	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:46365305..46370332

Molecular Weight (calculated)

63821.4 Da

IEP (calculated)

9.938

GRAVY (calculated)

-0.353

Length

595 amino acids

Sequence
(BLAST)

001: MLTAVLRRTS STLSRRGFPA ALISASTATA TATAGNHFRL LSAAVNSRTF HSNPGPLNFR ASSCHRAEYA VDDFPYEEGS KGNADEGLEI AKLGISQDIV
101: SALAKKGITK LFPIQRAVLE PAMQGRDMIG RARTGTGKTL AFGIPIMDKV IQFNAKHGRG RDPLALVLAP TRELARQVES EFCESAPNLD TICVYGGTPI
201: SQQMRQLDYG VDIAVGTPGR IIDLLNRGAL NLKDVQFVVL DEADQMLQVG FQEDVEKILE RLPPKRQTLM FSATMPSWIK QISRNYLNNP LTIDLVGDSD
301: QKLADGISLY SIATDLYVKA GILAPLITEH AKGGKCIVFT QTKRDADRLS YAMARSVKCE ALHGDISQAQ REKTLAGFRN GHFNVLVATD VASRGLDIPN
401: VDLVIHYDLP NNSEIFVHRS GRTGRAGKKG TAILVYTEDQ SRAVKLIERD VGSRFSELPR IAVDSASAVM VDSMGGGRFG SFGGNRDRRY GDMGFGSGHS
501: GGYSNPGSGR SSFGNSGERF GGQNYNRFGS SGGFGSGQSG SRSGGSSSRS RFSRSDDFGG FGGSDRSGGF GDFGSGQSSG FGGSRGSKQN NRRPF

Best Arabidopsis Sequence Match ( AT3G22330.1 )
(BLAST)

001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY

Arabidopsis Description

RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.