CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37408	Canola	mitochondrion	96.47	81.86
CDY10634	Canola	mitochondrion	94.51	80.07
Bra031349.1-P	Field mustard	mitochondrion	94.12	79.73
CDY46329	Canola	mitochondrion	80.2	74.5
Zm00001d008884_P001	Maize	cytosol	24.9	73.84
AT3G22310.1	Thale cress	mitochondrion	84.71	70.82
Zm00001d030797_P001	Maize	mitochondrion	27.25	66.83
CDY46330	Canola	nucleus	38.24	66.78
Zm00001d048578_P001	Maize	cytosol	27.84	60.68
Os07t0143700-01	Rice	plastid	37.45	58.05
PGSC0003DMT400074131	Potato	plastid	56.67	58.03
KRH73571	Soybean	nucleus	62.35	53.45
GSMUA_Achr7P00980_001	Banana	mitochondrion	53.73	52.9
KRH45952	Soybean	mitochondrion	60.98	51.41
KRG99044	Soybean	mitochondrion	61.96	49.14
EER97966	Sorghum	mitochondrion	57.84	49.0
VIT_12s0142g00670.t01	Wine grape	plastid	63.92	48.95
HORVU2Hr1G060640.15	Barley	cytosol	50.39	48.13
TraesCS5B01G052100.1	Wheat	mitochondrion	55.88	47.74
Zm00001d018787_P001	Maize	mitochondrion	56.86	47.62
Zm00001d031050_P002	Maize	mitochondrion	56.86	47.46
TraesCS5D01G057800.1	Wheat	mitochondrion	55.88	47.42
Zm00001d041480_P001	Maize	mitochondrion	55.69	47.41
EES17375	Sorghum	mitochondrion	57.06	47.09
Solyc07g044760.2.1	Tomato	plastid	58.04	46.98
TraesCS2A01G253700.1	Wheat	mitochondrion	56.47	46.53
TraesCS2B01G273300.1	Wheat	plastid	56.27	46.37
TraesCS5A01G047300.2	Wheat	mitochondrion	55.88	46.27
TraesCS2D01G254200.1	Wheat	mitochondrion	56.08	46.2
Os12t0611200-01	Rice	nucleus	56.67	46.02
HORVU5Hr1G011460.3	Barley	mitochondrion	55.69	45.44
Solyc12g006320.1.1	Tomato	plastid	57.25	45.41
GSMUA_Achr2P13080_001	Banana	plastid	61.18	42.28
CDX80564	Canola	plastid	47.25	33.1
CDY05524	Canola	plastid	47.65	32.93
CDY66725	Canola	plastid	47.84	32.84
CDX87045	Canola	plastid	47.84	32.71
CDY61108	Canola	plastid	48.04	32.67
CDY19766	Canola	plastid	48.04	32.19
CDY28363	Canola	plastid	17.06	31.75
GSMUA_Achr2P13070_001	Banana	cytosol	61.37	26.48
CDX87236	Canola	nucleus	32.75	26.22
CDY16789	Canola	nucleus	32.35	25.98
CDY44172	Canola	cytosol	22.94	22.03
CDY22890	Canola	cytosol	22.75	21.85
CDY34116	Canola	cytosol	14.12	14.12
CDY44622	Canola	cytosol	14.71	8.68

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	GO:A0A078HI42	UniProt:A0A078HI42	EnsemblPlants:CDY37406	ProteinID:CDY37406
ProteinID:CDY37406.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00063978001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0004EE561A	SEG:seg	:	:	:

Description

BnaC05g30240DBnaC05g30240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI42]

Coordinates

chrLK032399:+:296987..298951

Molecular Weight (calculated)

55092.4 Da

IEP (calculated)

9.196

GRAVY (calculated)

-0.110

Length

510 amino acids

Sequence
(BLAST)

001: MISTVLRRSV LGASRRTQTL SASLTSINAA LLHHLTPSPS AATVSVLKSG VALPQTPNPY GVKARDFHFQ SRPSEFRASM ASSAGFAAQD YAPSYDGGDS
101: EESVGSSGDG GDGLAISDLG ISPEIVKALS GRGIDKLFPI QKAVLEPAMQ GRDMIGRART GTGKTLAFGI PVIDKIIKFN AKHGRGKNPL CLVLAPTREL
201: ARQVEKEFRE SAPSLDTICL YGGTPIGQQM RELNYGVDVA VGTPGRIIDL MKRGALNLSE VQFIVLDEAD QMLQVGFAED VEVILQKLPE KRQSMMFSAT
301: MPSWIRSLTK KYLNNPLTID LVGDSDQKLA DGITMYSISA DSYGKASIIG PLVEAHGKGG KCIVFTQTKR DADRLSYGLA KTFKCEALHG DISQSQRERT
401: LAGFRDGNFN ILVATDVAAR GLDVPNVDLV IHYELPNNTE TFVHRTGRTG RAGKKGNAIL IHGPEQSRAV KMIEREVGSK FTEVYDSITL LTLSFFLFLL
501: LRLNFGIGLG

Best Arabidopsis Sequence Match ( AT3G22310.1 )
(BLAST)

001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
601: FGSNDGKRSY

Arabidopsis Description

RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.