CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033519.1-P	Field mustard	cytosol	99.81	99.81
CDY44172	Canola	cytosol	97.36	97.36
AT4G15850.1	Thale cress	nucleus	81.36	82.76
VIT_10s0003g04000.t01	Wine grape	nucleus	63.09	64.92
Solyc07g005890.2.1	Tomato	nucleus	61.77	63.94
PGSC0003DMT400059139	Potato	cytosol	61.21	63.35
TraesCS3A01G243600.1	Wheat	cytosol	25.61	62.39
GSMUA_Achr10P...	Banana	cytosol	58.76	60.94
KRH42587	Soybean	nucleus	33.15	57.33
EES07679	Sorghum	nucleus	54.8	56.07
Os02t0795900-01	Rice	nucleus	54.43	55.47
TraesCS6A01G358500.1	Wheat	nucleus	54.61	55.13
TraesCS6B01G391200.1	Wheat	nucleus	54.43	54.94
TraesCS6D01G341300.1	Wheat	nucleus	54.24	54.75
KRH15843	Soybean	cytosol	38.79	54.35
Zm00001d018375_P001	Maize	nucleus	53.48	54.3
KRH15837	Soybean	nucleus	18.27	51.87
HORVU6Hr1G085490.2	Barley	mitochondrion	54.99	50.87
TraesCS3D01G247800.1	Wheat	nucleus	42.18	48.8
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	12.99	46.31
KRH15846	Soybean	nucleus	47.65	45.34
KRH44787	Soybean	nucleus	51.04	43.92
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	60.83	42.06
Zm00001d052036_P001	Maize	plastid	14.31	36.19
CDY37406	Canola	mitochondrion	21.85	22.75
CDY28363	Canola	plastid	11.11	21.53
CDY46329	Canola	mitochondrion	21.66	20.95
CDY10634	Canola	mitochondrion	21.85	19.27
CDY37408	Canola	mitochondrion	21.66	19.13
CDY05524	Canola	plastid	25.99	18.7
CDX80564	Canola	plastid	25.61	18.68
CDX87045	Canola	plastid	26.18	18.63
CDY46330	Canola	nucleus	10.17	18.49
CDY66725	Canola	plastid	25.8	18.44
CDY61108	Canola	plastid	25.99	18.4
CDY19766	Canola	plastid	26.18	18.27
CDY16789	Canola	nucleus	20.53	17.17
CDX87236	Canola	nucleus	20.53	17.11
CDY34116	Canola	cytosol	8.66	9.02
CDY44622	Canola	cytosol	9.42	5.79

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078G8Y1	UniProt:A0A078G8Y1	EnsemblPlants:CDY22890	ProteinID:CDY22890
ProteinID:CDY22890.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006605	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	EnsemblPlantsGene:GSBRNA2T00021256001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PRINTS:PR00906
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF68	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	InterPro:SecA	UniParc:UPI0004EF257D	SEG:seg

Description

BnaA01g18280DBnaA01g18280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8Y1]

Coordinates

chrLK032137:-:126131..129145

Molecular Weight (calculated)

58412.7 Da

IEP (calculated)

9.040

GRAVY (calculated)

-0.174

Length

531 amino acids

Sequence
(BLAST)

001: MVEEEKDGEA QAQEETTNLV VPWMRAPVDV SHVDSCSLET LPSLHPRLKE ALEKMGISSL FPVQVAVWHE TIGPGGFERD VCVNSPTGSG KTLSYALPIV
101: QTLSSRAVRC LRALVVLPTR DLALQVKGVF DAIAPSVGLS VGSAVGQSSI AGDIAQLIKT PKLDAGICYD PEDISQNLES SAVDILVATP GRLMDHINNT
201: KGFTLEHLRY LVVDETDRLL RESYQEWLPT VLKLTQASDD GLFPSSTPFV PSAFGSLQTI RRQSVERGFK GKPYPRLAKL ALSATLTQDP SKLIQLDLHH
301: PLFMTTGATR YRLPEKLECL RLICETGVKP VYLVGLLKAL EGEKCIVFTS SVETTRRLCK LLNFFGDSMI KAKEYSGGLN QAVRSKEIKA FRKGDIKVLI
401: SSDALARGMD VELVTNVINY DMPQYPKTFI HRAGRTARAG RDGRCFTLLG DHEVRRFSSL LKKVGNASCP IYPIPPDLFA PVRAIYEPAL AKLKESVEPI
501: APKRGRQVGF KHNSRTTNSQ TKRNKATSEQ A

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.