Factsheet for PGSC0003DMT400059139

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g005890.2.1	Tomato	nucleus	98.05	98.05
VIT_10s0003g04000.t01	Wine grape	nucleus	73.49	73.06
GSMUA_Achr10P...	Banana	cytosol	69.01	69.14
TraesCS3A01G243600.1	Wheat	cytosol	27.1	63.76
EES07679	Sorghum	nucleus	63.74	63.01
Os02t0795900-01	Rice	nucleus	63.94	62.96
AT4G15850.1	Thale cress	nucleus	63.74	62.64
CDY44172	Canola	cytosol	63.74	61.58
Zm00001d018375_P001	Maize	nucleus	62.77	61.57
Bra033519.1-P	Field mustard	cytosol	63.35	61.21
CDY22890	Canola	cytosol	63.35	61.21
TraesCS6B01G391200.1	Wheat	nucleus	61.6	60.08
TraesCS6A01G358500.1	Wheat	nucleus	61.6	60.08
TraesCS6D01G341300.1	Wheat	nucleus	61.21	59.7
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	88.89	59.38
KRH15843	Soybean	cytosol	43.86	59.37
KRH42587	Soybean	nucleus	34.5	57.65
TraesCS3D01G247800.1	Wheat	nucleus	49.32	55.12
HORVU6Hr1G085490.2	Barley	mitochondrion	61.6	55.05
KRH15837	Soybean	nucleus	19.88	54.55
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	14.23	48.99
KRH15846	Soybean	nucleus	50.88	46.77
KRH44787	Soybean	nucleus	55.75	46.35
Zm00001d052036_P001	Maize	plastid	14.81	36.19
PGSC0003DMT400074131	Potato	plastid	23.0	23.69
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	21.83	16.74
PGSC0003DMT400079640	Potato	nucleus	21.05	16.02

Protein Annotations

EntrezGene:102580927	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	UniProt:M1C3V3	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400022975
PGSC:PGSC0003DMG400022975	EnsemblPlants:PGSC0003DMT400059139	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF68
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002967C84	RefSeq:XP_006362460.1	RefSeq:XP_006362461.1
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400022975]

Coordinates

chr7:-:6070048..6079747

Molecular Weight (calculated)

57474.0 Da

IEP (calculated)

9.518

GRAVY (calculated)

-0.157

Length

513 amino acids

Sequence
(BLAST)

001: MEEDKGLKKE KKNIPVLPWM RNPVDITTFD QCSVVLLPFI DPRLVAALKN MSITSLFPVQ LAVWQETIGP GSFERDLCIN SPTGSGKTIA YALPIVQMLS
101: TRAVKCLRAL VVLPTRDLAL QVKEVFSALA PAVGLSVGLA VGQSSISDEI SELIKKPNVE YGICYDPEEF SYELQSAVGI LVATPGRLMD HINNTDGFTL
201: EHLSYLVVDE TDRLLREAYQ SWLPTVIQLT SSSVDGNFPS SADLLPCTYG SLKTIRRMGT ERGFKGKAYP RLAKMVLSAT LTQDPSKLAQ LDLHHPLLLT
301: TGERRYKLPE ELKSFKVLCQ SKLKPLYLVS LLQSLQGEKS IVFTSSVEST HRLCTLLKFF DNLQIEFKEY SRLQRQSVRS KTLRAFRSGQ VQVLISSDAM
401: TRGMDVEGVR NVINYDMPAY IKTFIHRAGR TARAGLSGCC FTLMHKDEVK RFKKMLQKAD CNSCPTYSAS SEVIESLRSV YSSALEKLRE NVESEKFKKS
501: KIRLKSSNVR KEK

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.