Factsheet for GSMUA_Achr10P30700_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G243600.1	Wheat	cytosol	29.88	70.18
VIT_10s0003g04000.t01	Wine grape	nucleus	70.31	69.77
PGSC0003DMT400059139	Potato	cytosol	69.14	69.01
Solyc07g005890.2.1	Tomato	nucleus	69.14	69.01
Os02t0795900-01	Rice	nucleus	68.36	67.18
EES07679	Sorghum	nucleus	67.77	66.86
Zm00001d018375_P001	Maize	nucleus	66.41	65.01
TraesCS6A01G358500.1	Wheat	nucleus	65.23	63.5
TraesCS6B01G391200.1	Wheat	nucleus	65.04	63.31
TraesCS6D01G341300.1	Wheat	nucleus	64.84	63.12
AT4G15850.1	Thale cress	nucleus	63.87	62.64
CDY44172	Canola	cytosol	61.33	59.13
CDY22890	Canola	cytosol	60.94	58.76
Bra033519.1-P	Field mustard	cytosol	60.94	58.76
HORVU6Hr1G085490.2	Barley	mitochondrion	65.82	58.71
TraesCS3D01G247800.1	Wheat	nucleus	51.37	57.3
KRH15843	Soybean	cytosol	41.99	56.73
KRH42587	Soybean	nucleus	33.2	55.37
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	15.43	53.02
KRH15837	Soybean	nucleus	19.14	52.41
KRH15846	Soybean	nucleus	48.83	44.8
KRH44787	Soybean	nucleus	53.12	44.08
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	64.65	43.1
Zm00001d052036_P001	Maize	plastid	16.02	39.05
GSMUA_Achr7P05930_001	Banana	nucleus	23.05	19.44
GSMUA_Achr7P00980_001	Banana	mitochondrion	18.75	18.53
GSMUA_Achr2P01980_001	Banana	nucleus	24.61	18.1
GSMUA_Achr11P...	Banana	plastid	25.78	17.05
GSMUA_Achr4P19590_001	Banana	nucleus	23.83	16.94
GSMUA_Achr2P13080_001	Banana	plastid	21.29	14.77
GSMUA_Achr2P13070_001	Banana	cytosol	21.48	9.31

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr10G30700_001	EnsemblPlants:GSMUA_Achr10P30700_001	EnsemblPlants:GSMUA_Achr10T30700_001
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M0RMU4	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF68
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000294D79E	:	:

Description

DEAD-box ATP-dependent RNA helicase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G30700_001]

Coordinates

chr10:+:32974189..32985196

Molecular Weight (calculated)

57755.7 Da

IEP (calculated)

10.239

GRAVY (calculated)

-0.232

Length

512 amino acids

Sequence
(BLAST)

001: MGDDSQKVKR VPHLPWMRNP VDIDQFEERP LGFLPSLDPR LKEALQKMGI QSLFPVQVAV WQETIGPGAF ERDICVNSPT GSGKTLAYAL PIVQMLAHRK
101: IRCLRALVVL PTRDLALQVK EVFSAIAPAV GLRVGLAVGQ SSIADEISEL IERPKLGSCS PFDPEDVYME LQTAVDILVA TPGRLMDHIN MTKGFSLEHL
201: CYLVVDETDR LLREAYQSWL PNVIQLTQSN DQTCHATSIH VIPGSLTTIR RCGVEKGFKG KVYPRFVKMI LSATLTQDPS KISQLDLHHP LLLTSGDKRY
301: KLPKRLESFK LVCRSKLKPL YLVALLQTLG AEKSIVFTSS VESTHRLSTL LKFFGELPFK ISEYSRRQCQ PVRSKKLKAF REGKTQVLIA TDAMTRGMDV
401: EGIRNVINYD MPAFVKTYIH RAGRTARAGQ SGRCFTLMRK DEVKRFNKLL EKADNNSCII HSLPTDSVES LRPLYSSALE KLKEHEQSWT ARKSRISFKS
501: VRASKRKIVQ KK

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.