Factsheet for TraesCS6B01G391200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G341300.1	Wheat	nucleus	98.29	98.29
TraesCS6A01G358500.1	Wheat	nucleus	98.29	98.29
HORVU6Hr1G085490.2	Barley	mitochondrion	96.39	88.33
Os02t0795900-01	Rice	nucleus	82.89	83.69
EES07679	Sorghum	nucleus	82.13	83.24
GSMUA_Achr10P...	Banana	cytosol	63.31	65.04
Solyc07g005890.2.1	Tomato	nucleus	60.27	61.79
PGSC0003DMT400059139	Potato	cytosol	60.08	61.6
VIT_10s0003g04000.t01	Wine grape	nucleus	60.08	61.24
AT4G15850.1	Thale cress	nucleus	54.75	55.17
CDY44172	Canola	cytosol	55.13	54.61
Bra033519.1-P	Field mustard	cytosol	54.94	54.43
CDY22890	Canola	cytosol	54.94	54.43
KRH42587	Soybean	nucleus	31.18	53.42
KRH15843	Soybean	cytosol	37.45	51.98
KRH15837	Soybean	nucleus	18.06	50.8
Zm00001d052036_P001	Maize	plastid	17.3	43.33
KRH15846	Soybean	nucleus	44.49	41.94
KRH44787	Soybean	nucleus	47.91	40.84
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	55.32	37.89
TraesCS5B01G052100.1	Wheat	mitochondrion	21.48	18.93
TraesCS2B01G273300.1	Wheat	plastid	21.1	17.93
TraesCS5B01G309500.1	Wheat	nucleus	21.29	16.0
TraesCS5B01G504900.1	Wheat	plastid	23.57	15.42

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031
PANTHER:PTHR24031:SF68	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS6B01G391200	EnsemblPlants:TraesCS6B01G391200.1
TIGR:cd00079	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:665512054..665516288

Molecular Weight (calculated)

59161.0 Da

IEP (calculated)

9.841

GRAVY (calculated)

-0.311

Length

526 amino acids

Sequence
(BLAST)

001: MVAMKTKGQE DEAPEERVPH LPWMRHPVDI DSFSGCPVTS LPRLDPRLAE ALQRMGIESF FPVQVSTWLE TIGPGAFQRD ICINSPTGSG KTLAYALPIV
101: QMLSTRKVRC LRALVVLPTR DLALQVKEVF DVIAPVVGLT VASAVGQSSI ADEISNLIKK SKQELYPSLD DEYVEMEPQT KVDILVATPG RLMDHINMTK
201: GFSLEHLQYL VVDETDRMLR EAYQSWLPTV IQFTRPTNQD HFRHDTAGRT LLHPLTTIRR SGVERGFKGK CYPRLAKIVC SATLTQDPSK LSQLELHHPL
301: LLNSGKKRYR IPTKLESYKL ICTSNIKPLC LIVLLQELRG EKCLVFTKSV DDSHRLSTLL GFFDDLPFKF SEFSSLQRES TRRKTLAAFK EGKIDVLIGS
401: DIMARGIHID GLRYVINYEM PQYVKTYIHR AGRTARAGES GSCFTFLRKN EVKRFAKMLK KADGSSCILR SLPEESIDSL RPVFETALEK LKDKLKGSAE
501: PEASKKSNKS GDKAPGALKR KRGKQT

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.