Factsheet for TraesCS5B01G052100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G057800.1	Wheat	mitochondrion	95.48	94.84
TraesCS5A01G047300.2	Wheat	mitochondrion	96.48	93.51
HORVU5Hr1G011460.3	Barley	mitochondrion	90.95	86.88
EES17375	Sorghum	mitochondrion	74.87	72.33
Zm00001d031050_P002	Maize	mitochondrion	73.7	72.01
Os12t0611200-01	Rice	nucleus	75.71	71.97
Zm00001d041480_P001	Maize	mitochondrion	72.03	71.79
KRH14557	Soybean	mitochondrion	32.16	59.44
PGSC0003DMT400074131	Potato	plastid	47.57	57.03
CDY37406	Canola	mitochondrion	47.74	55.88
KRH73571	Soybean	nucleus	54.77	54.96
CDY46330	Canola	nucleus	26.8	54.79
CDY46329	Canola	mitochondrion	50.25	54.64
GSMUA_Achr7P00980_001	Banana	mitochondrion	46.06	53.09
Solyc07g044760.2.1	Tomato	plastid	55.78	52.86
TraesCS2B01G273300.1	Wheat	plastid	54.61	52.67
KRH45952	Soybean	mitochondrion	53.1	52.4
Bra023836.1-P	Field mustard	mitochondrion	53.1	51.38
Bra031349.1-P	Field mustard	mitochondrion	51.59	51.16
AT3G22330.1	Thale cress	mitochondrion	52.76	51.14
CDY37408	Canola	mitochondrion	51.42	51.08
CDY10634	Canola	mitochondrion	51.42	51.0
VIT_12s0142g00670.t01	Wine grape	plastid	56.78	50.9
AT3G22310.1	Thale cress	mitochondrion	51.09	50.0
KRG99044	Soybean	mitochondrion	53.6	49.77
KRH14556	Soybean	cytosol	23.79	49.48
Solyc12g006320.1.1	Tomato	plastid	52.76	48.99
GSMUA_Achr2P13080_001	Banana	plastid	58.29	47.15
TraesCS5B01G504900.1	Wheat	plastid	43.89	32.59
GSMUA_Achr2P13070_001	Banana	cytosol	59.46	30.03
TraesCS5B01G309500.1	Wheat	nucleus	32.16	27.43
TraesCS6B01G391200.1	Wheat	nucleus	18.93	21.48

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF296	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS5B01G052100	EnsemblPlants:TraesCS5B01G052100.1	TIGR:cd00079	TIGR:cd00268	SEG:seg

Description

No Description!

Coordinates

chr5B:+:57433838..57437320

Molecular Weight (calculated)

62449.5 Da

IEP (calculated)

10.251

GRAVY (calculated)

-0.258

Length

597 amino acids

Sequence
(BLAST)

001: MYAMIRRADP LRRRAASAIM AALLQHPAGP SAAGASASAL RPRSPLPPPA MWFHSRPAPL GFRETGAARA GAHAQFAADE GWNYEDKRKP AGGVAGAGAK
101: EEGLEIAKLG ISSEIVDKLS AKGITKLFPI QRAVLEPAMQ GKDMVGRAKT GTGKTLAFGI PIMDAIIRHN AANKPGIHPL AICLAPTREL AKQVEKEFVD
201: SSRLETLCVY GGIPIQQQMR VLSQGVDVVV GTPGRVIDLL NRRALNLSSV QFVVLDEADQ MLSVGFDEAV ETILQNVPAK RQTLMFSATM PPWIRKLMQK
301: YLKDPVIVDL VGEDDQKLAE GISLLSIATE NHAKPAVLGQ LIQDHAKGGK CIVFTQTKRD ADRLSYTMGR SFQCQALHGD ITQQQRERTL QGFREGHFNT
401: LIATDVAARG LDIPNVDLVI HYELPNNSEI FVHRSGRTGR AGKKGTAIVM YSYNQSRAVR GIENDVGGKF KELPKINVEG SDLTMSSGFD SFGGGGGGGR
501: SRGGGFGGRS GGFVNSSSRG GGFGDSGFGR SGGGFGRSGG GGGFGDSGFG RSGGGGGFGS SGGFGDSGSG RSGGFGSGSG SSGSSWGGFG SFGGKSS

Best Arabidopsis Sequence Match ( AT3G22330.1 )
(BLAST)

001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY

Arabidopsis Description

RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.