Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- mitochondrion 7
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37408 | Canola | mitochondrion | 83.61 | 84.86 |
| CDY10634 | Canola | mitochondrion | 83.61 | 84.72 |
| CDY37406 | Canola | mitochondrion | 70.82 | 84.71 |
| Bra031349.1-P | Field mustard | mitochondrion | 82.95 | 84.05 |
| AT3G22330.1 | Thale cress | mitochondrion | 79.51 | 78.73 |
| Zm00001d008884_P001 | Maize | cytosol | 20.49 | 72.67 |
| Zm00001d030797_P001 | Maize | mitochondrion | 22.79 | 66.83 |
| Zm00001d048578_P001 | Maize | cytosol | 23.11 | 60.26 |
| KRH45952 | Soybean | mitochondrion | 57.38 | 57.85 |
| Os07t0143700-01 | Rice | plastid | 31.15 | 57.75 |
| KRH73571 | Soybean | nucleus | 56.23 | 57.65 |
| PGSC0003DMT400074131 | Potato | plastid | 47.05 | 57.63 |
| EER97966 | Sorghum | mitochondrion | 56.07 | 56.81 |
| KRG99044 | Soybean | mitochondrion | 58.69 | 55.68 |
| Zm00001d018787_P001 | Maize | mitochondrion | 54.92 | 55.01 |
| VIT_12s0142g00670.t01 | Wine grape | plastid | 59.84 | 54.8 |
| HORVU2Hr1G060640.15 | Barley | cytosol | 47.87 | 54.68 |
| Solyc07g044760.2.1 | Tomato | plastid | 54.59 | 52.86 |
| GSMUA_Achr7P00980_001 | Banana | mitochondrion | 44.75 | 52.7 |
| TraesCS2A01G253700.1 | Wheat | mitochondrion | 53.28 | 52.5 |
| TraesCS2B01G273300.1 | Wheat | plastid | 52.79 | 52.02 |
| TraesCS2D01G254200.1 | Wheat | mitochondrion | 52.62 | 51.86 |
| Os12t0611200-01 | Rice | nucleus | 52.95 | 51.43 |
| Zm00001d031050_P002 | Maize | mitochondrion | 51.31 | 51.23 |
| EES17375 | Sorghum | mitochondrion | 51.8 | 51.13 |
| TraesCS5B01G052100.1 | Wheat | mitochondrion | 50.0 | 51.09 |
| Zm00001d041480_P001 | Maize | mitochondrion | 50.0 | 50.92 |
| TraesCS5D01G057800.1 | Wheat | mitochondrion | 49.84 | 50.58 |
| TraesCS5A01G047300.2 | Wheat | mitochondrion | 50.98 | 50.49 |
| HORVU5Hr1G011460.3 | Barley | mitochondrion | 51.15 | 49.92 |
| Solyc12g006320.1.1 | Tomato | plastid | 52.13 | 49.46 |
| GSMUA_Achr2P13080_001 | Banana | plastid | 55.41 | 45.8 |
| AT5G26742.2 | Thale cress | plastid | 44.75 | 36.5 |
| GSMUA_Achr2P13070_001 | Banana | cytosol | 57.54 | 29.7 |
| AT5G62190.1 | Thale cress | nucleus | 31.48 | 28.61 |
| AT4G15850.1 | Thale cress | nucleus | 19.18 | 22.41 |
Protein Annotations
| MapMan:16.12.2.2.1.4 | Gene3D:3.40.50.300 | EntrezGene:821800 | ProteinID:AEE76620.1 | EMBL:AJ010461 | ArrayExpress:AT3G22310 |
| EnsemblPlantsGene:AT3G22310 | RefSeq:AT3G22310 | TAIR:AT3G22310 | RefSeq:AT3G22310-TAIR-G | EnsemblPlants:AT3G22310.1 | TAIR:AT3G22310.1 |
| EMBL:AY091091 | Unigene:At.25190 | ProteinID:BAB01768.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009409 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 |
| GO:GO:0010501 | GO:GO:0016787 | GO:GO:0019034 | GO:GO:0039694 | GO:GO:0043234 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_188870.1 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | Symbol:PMH1 | PO:PO:0000293 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF326 | UniProt:Q9LUW6 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI00000AB1B0 | SEG:seg | : | : |
Description
RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
Coordinates
chr3:+:7887276..7890153
Molecular Weight (calculated)
63613.2 Da
IEP (calculated)
9.872
GRAVY (calculated)
-0.266
Length
610 amino acids
Sequence
(BLAST)
(BLAST)
001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
601: FGSNDGKRSY
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
601: FGSNDGKRSY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.