Factsheet for Zm00001d018787_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008884_P001	Maize	cytosol	27.42	97.09
EER97966	Sorghum	mitochondrion	89.98	91.03
Zm00001d030797_P001	Maize	mitochondrion	30.21	88.46
Zm00001d048578_P001	Maize	cytosol	31.69	82.48
Os07t0143700-01	Rice	plastid	42.86	79.33
HORVU2Hr1G060640.15	Barley	cytosol	65.68	74.91
TraesCS2A01G253700.1	Wheat	mitochondrion	75.37	74.15
TraesCS2D01G254200.1	Wheat	mitochondrion	75.04	73.83
TraesCS2B01G273300.1	Wheat	plastid	74.88	73.67
CDY46330	Canola	nucleus	29.39	61.3
KRH14557	Soybean	mitochondrion	32.35	60.99
PGSC0003DMT400074131	Potato	plastid	47.62	58.23
CDY37406	Canola	mitochondrion	47.62	56.86
CDY46329	Canola	mitochondrion	51.23	56.83
Zm00001d041480_P001	Maize	mitochondrion	55.01	55.93
Zm00001d031050_P002	Maize	mitochondrion	55.83	55.65
KRH73571	Soybean	nucleus	53.69	54.96
AT3G22310.1	Thale cress	mitochondrion	55.01	54.92
AT3G22330.1	Thale cress	mitochondrion	55.01	54.38
VIT_12s0142g00670.t01	Wine grape	plastid	59.44	54.35
CDY10634	Canola	mitochondrion	53.53	54.15
CDY37408	Canola	mitochondrion	53.37	54.08
Bra031349.1-P	Field mustard	mitochondrion	53.37	53.99
Bra023836.1-P	Field mustard	mitochondrion	54.52	53.81
KRH45952	Soybean	mitochondrion	52.71	53.06
Solyc07g044760.2.1	Tomato	plastid	54.02	52.22
KRG99044	Soybean	mitochondrion	53.86	51.01
Solyc12g006320.1.1	Tomato	plastid	52.05	49.3
KRH14556	Soybean	cytosol	22.17	47.04
Zm00001d032793_P001	Maize	cytosol	4.11	39.68
Zm00001d033226_P001	Maize	cytosol	7.88	38.4
Zm00001d012922_P003	Maize	plastid	42.86	35.03
Zm00001d034721_P002	Maize	plastid	42.86	34.43
Zm00001d043739_P001	Maize	mitochondrion	10.34	30.29
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	11.82	28.8
Zm00001d031584_P001	Maize	cytosol	9.69	28.64
Zm00001d021196_P004	Maize	nucleus	29.56	25.46
Zm00001d006160_P001	Maize	nucleus	29.23	25.28
Zm00001d018375_P001	Maize	nucleus	18.23	21.22
Zm00001d035797_P001	Maize	mitochondrion	15.93	17.02
Zm00001d050438_P002	Maize	extracellular	8.7	16.46
Zm00001d052036_P001	Maize	plastid	5.42	15.71
Zm00001d049075_P001	Maize	extracellular, golgi	11.17	14.05
Zm00001d035226_P001	Maize	plasma membrane	7.39	12.93
Zm00001d024138_P001	Maize	plastid	5.25	11.35
Zm00001d049254_P001	Maize	cytosol	1.48	4.71
Zm00001d046048_P001	Maize	cytosol	1.15	3.72

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	UniProt:A0A1D6HS48	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	ProteinID:ONM51287.1
ProteinID:ONM51288.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI000844BD52	EnsemblPlantsGene:Zm00001d018787	EnsemblPlants:Zm00001d018787_P001	EnsemblPlants:Zm00001d018787_T001	SEG:seg

Description

DEAD-box ATP-dependent RNA helicase 53

Coordinates

chr7:-:5210807..5216700

Molecular Weight (calculated)

66195.5 Da

IEP (calculated)

9.669

GRAVY (calculated)

-0.430

Length

609 amino acids

Sequence
(BLAST)

001: MISLLRRALA ASASSPAATY RRLLVVAPLS PRAAPPGPCQ APAAGSQEPP RRAFHCSTAP LGFRSTPASW AGPCPGEGEG EGVDTGAEKG LEIARLGTSP
101: RIVEKLAARG ITRLFPIQRA VLEPAMQGKD MIGRARTGTG KTLAFGIPIM DKILSYNEKT GNGRNPLAII LAPTRELARQ VEKEFRESAP LDTLCVYGGV
201: PINQQMRALN YGVDIVVGTP GRVIDLLRRG VLNLSQIQFV VLDEADQMLA VGFDEDVEVI MEQLPQNRQS MLFSATMPSW IRKISNKYLK DPVIIDLVGD
301: SDQKLPEGIS LYSIASDNFG KPSIIGPLIK EHANGGKCIV FTQTKREADR LAYVMGRSYQ CQALHGDISQ NQRERTLSGF RDGRFNILVA TDVAARGLDI
401: PNVDLVVHYE IPNTSELFVH RSGRTARAGK KGSAILIYTY EQTRAVRVIE QDIGCRFTEL PKMPVSDEAA DMFNVMRDTR SRSVGSRRTG GPFSREGYGD
501: FEDHRSRGFG DFERFGGSSD RGGGFRDSGS RYHGGSGGFR RSSSDFGRPS FSRSDRFGDF GDSDFSRRGN ADFGRSRSSD DSGSSRYPRG YGGSGTSDSG
601: NFGGFKGSK

Best Arabidopsis Sequence Match ( AT3G22330.1 )
(BLAST)

001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY

Arabidopsis Description

RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.