Factsheet for Zm00001d032793_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031584_P001	Maize	cytosol	73.02	22.33
Zm00001d043739_P001	Maize	mitochondrion	71.43	21.63
Zm00001d033226_P001	Maize	cytosol	25.4	12.8
Zm00001d008884_P001	Maize	cytosol	31.75	11.63
Zm00001d030797_P001	Maize	mitochondrion	31.75	9.62
Zm00001d048578_P001	Maize	cytosol	31.75	8.55
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	28.57	7.2
Zm00001d041480_P001	Maize	mitochondrion	39.68	4.17
Zm00001d049075_P001	Maize	extracellular, golgi	31.75	4.13
Zm00001d018787_P001	Maize	mitochondrion	39.68	4.11
Zm00001d031050_P002	Maize	mitochondrion	39.68	4.09
Zm00001d012922_P003	Maize	plastid	44.44	3.76
Zm00001d034721_P002	Maize	plastid	44.44	3.69
Zm00001d035797_P001	Maize	mitochondrion	31.75	3.51
Zm00001d006160_P001	Maize	nucleus	36.51	3.27
Zm00001d021196_P004	Maize	nucleus	36.51	3.25
Zm00001d018375_P001	Maize	nucleus	23.81	2.87
VIT_08s0007g03740.t01	Wine grape	extracellular	3.17	2.63
Zm00001d052036_P001	Maize	plastid	6.35	1.9
Zm00001d024138_P001	Maize	plastid	7.94	1.77
Zm00001d035226_P001	Maize	plasma membrane	6.35	1.15
Zm00001d050438_P002	Maize	extracellular	4.76	0.93
Zm00001d046048_P001	Maize	cytosol	0.0	0.0
Zm00001d049254_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6KU01	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
ProteinID:ONM06063.1	InterPro:P-loop_NTPase	PFAM:PF00270	ScanProsite:PS00039	PANTHER:PTHR24031	PANTHER:PTHR24031:SF215
InterPro:RNA-helicase_DEAD-box_CS	SUPFAM:SSF52540	UniParc:UPI00084420C1	EnsemblPlantsGene:Zm00001d032793	EnsemblPlants:Zm00001d032793_P001	EnsemblPlants:Zm00001d032793_T001

Description

DEAD-box ATP-dependent RNA helicase 53

Coordinates

chr1:-:238279545..238280723

Molecular Weight (calculated)

6955.4 Da

IEP (calculated)

3.843

GRAVY (calculated)

0.313

Length

63 amino acids

Sequence
(BLAST)

1: MKDLIEMGVC CLNEVSFVVL DEADRMLDLG FEPEVRAILS QTSSGLYPLL SLPTEEAAFC SRT

Best Arabidopsis Sequence Match ( AT1G31970.1 )
(BLAST)

001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED

Arabidopsis Description

RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.