Factsheet for Zm00001d035226_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d036620_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	Zm00001d036620_P001	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049254_P001	Maize	cytosol	38.51	70.16
Zm00001d046048_P001	Maize	cytosol	32.47	60.11
Zm00001d049075_P001	Maize	extracellular, golgi	78.45	56.41
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	37.93	52.8
Zm00001d050438_P002	Maize	extracellular	37.93	40.99
Zm00001d035797_P001	Maize	mitochondrion	64.37	39.3
Zm00001d024138_P001	Maize	plastid	29.31	36.17
EER97062	Sorghum	nucleus	53.45	26.16
Zm00001d006160_P001	Maize	nucleus	52.87	26.14
Zm00001d021196_P004	Maize	nucleus	52.87	26.03
GSMUA_Achr7P05930_001	Banana	nucleus	45.11	25.86
HORVU5Hr1G080170.2	Barley	nucleus	47.13	25.31
Os09t0520700-01	Rice	nucleus, plastid	47.13	23.56
TraesCS5A01G308900.1	Wheat	nucleus	47.13	23.46
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	47.13	23.43
TraesCS5B01G309500.1	Wheat	nucleus	47.13	23.43
CDY28363	Canola	plastid	18.39	23.36
GSMUA_Achr4P19590_001	Banana	nucleus	42.82	20.69
PGSC0003DMT400079640	Potato	nucleus	39.94	20.62
Solyc03g007010.2.1	Tomato	nucleus	39.08	19.94
Bra029275.1-P	Field mustard	nucleus	37.64	19.88
VIT_16s0022g02110.t01	Wine grape	plastid	39.37	19.74
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	37.93	19.73
AT5G62190.1	Thale cress	nucleus	37.93	19.67
KRG91400	Soybean	nucleus	39.08	19.62
KRH35418	Soybean	endoplasmic reticulum	39.08	19.51
CDX87236	Canola	nucleus	33.05	18.05
CDY16789	Canola	nucleus	32.76	17.95
Bra035903.1-P	Field mustard	nucleus	32.18	17.69
Solyc06g035450.2.1	Tomato	nucleus	17.82	15.46
CDY34116	Canola	cytosol	20.98	14.31
Zm00001d008884_P001	Maize	cytosol	5.75	11.63
Zm00001d030797_P001	Maize	mitochondrion	6.32	10.58
Zm00001d012922_P003	Maize	plastid	20.69	9.66
Zm00001d048578_P001	Maize	cytosol	6.32	9.4
Zm00001d034721_P002	Maize	plastid	20.4	9.37
Zm00001d031050_P002	Maize	mitochondrion	15.52	8.84
Zm00001d041480_P001	Maize	mitochondrion	14.94	8.68
CDY44622	Canola	cytosol	20.4	8.22
Zm00001d018787_P001	Maize	mitochondrion	12.93	7.39
Zm00001d032793_P001	Maize	cytosol	1.15	6.35
Zm00001d043739_P001	Maize	mitochondrion	2.87	4.81
Zm00001d018375_P001	Maize	nucleus	7.18	4.78
Zm00001d031584_P001	Maize	cytosol	2.59	4.37
Zm00001d033226_P001	Maize	cytosol	1.15	3.2
Zm00001d052036_P001	Maize	plastid	0.29	0.48

Protein Annotations

EnsemblPlants:Zm00001d035226_P001	EnsemblPlants:Zm00001d035226_T001	EnsemblPlantsGene:Zm00001d035226	Gene3D:2.30.30.30	GO:GO:0003674	GO:GO:0003824
GO:GO:0004386	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	InterPro:IPR014722
InterPro:Rib_L2_dom2	PANTHER:PTHR24031	PANTHER:PTHR24031:SF327	ProteinID:AQK78549.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI000842D9EE	UniProt:A0A1D6LF29	MapMan:35.1	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 7

Coordinates

chr6:-:15067955..15073521

Molecular Weight (calculated)

38828.1 Da

IEP (calculated)

8.619

GRAVY (calculated)

0.341

Length

348 amino acids

Sequence
(BLAST)

001: MAPAALQGLS KCYILMLWDI LNIKCYMLML WSLIIKLLGI PSSILRADVL NVGTYTFKAI LKSHFKLLQK GSGCCNHVAD CLCCMCCIRL LDAVEDATKV
101: QTLLFSATLP DWVNKLSMRF LKVDRKTVDL VGNEKLKASA SVKHLALPCN KAAMAQVIPD IIRCYSQDVL PHRWLFFSNT GVAVMLYEPR YKHSDSRLER
201: ESGVKFEHIS APQPTDVTQS TGSEAADAIS SVSDSVIPIF RQQVEQLLSS SSLSAADLLA KALAKAVVCY NIPVIVFLHR WGHICSHWCY LQFDVGNVVM
301: VTGGRNTGRV GVIKNWEKHK GIFEVIDVLL GVFCMLCLVF SYLLYRKT

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.