Factsheet for PGSC0003DMT400079640

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011164
PGSC0003DMT400011166
PGSC0003DMT400056014
PGSC0003DMT400069100

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	PGSC0003DMT400011164	AT1G53720.1	16497658
AT5G62190.1	PGSC0003DMT400011166	AT1G53720.1	16497658
AT5G62190.1	PGSC0003DMT400056014	AT1G53720.1	16497658
AT5G62190.1	PGSC0003DMT400069100	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007010.2.1	Tomato	nucleus	95.4	94.28
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	79.23	79.82
GSMUA_Achr7P05930_001	Banana	nucleus	62.17	69.03
VIT_16s0022g02110.t01	Wine grape	plastid	70.47	68.44
KRG91400	Soybean	nucleus	68.1	66.23
KRH35418	Soybean	endoplasmic reticulum	68.1	65.85
CDX87236	Canola	nucleus	62.17	65.78
CDY16789	Canola	nucleus	61.72	65.51
Bra035903.1-P	Field mustard	nucleus	61.42	65.4
Bra029275.1-P	Field mustard	nucleus	62.91	64.34
AT5G62190.1	Thale cress	nucleus	62.17	62.44
HORVU5Hr1G080170.2	Barley	nucleus	59.79	62.19
CDY28363	Canola	plastid	25.22	62.04
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	23.0	62.0
GSMUA_Achr4P19590_001	Banana	nucleus	63.35	59.31
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	61.28	59.0
Zm00001d006160_P001	Maize	nucleus	61.57	58.95
TraesCS5B01G309500.1	Wheat	nucleus	60.98	58.71
TraesCS5A01G308900.1	Wheat	nucleus	60.68	58.51
Os09t0520700-01	Rice	nucleus, plastid	59.79	57.9
EER97062	Sorghum	nucleus	60.83	57.67
Zm00001d021196_P004	Maize	nucleus	60.24	57.43
Zm00001d035226_P001	Maize	plasma membrane	20.62	39.94
Zm00001d049075_P001	Maize	extracellular, golgi	26.85	37.4
Zm00001d035797_P001	Maize	mitochondrion	31.01	36.67
Zm00001d049254_P001	Maize	cytosol	10.24	36.13
Zm00001d046048_P001	Maize	cytosol	9.94	35.64
PGSC0003DMT400074131	Potato	plastid	26.26	35.54
Zm00001d024138_P001	Maize	plastid	14.54	34.75
Zm00001d050438_P002	Maize	extracellular	16.32	34.16
CDY34116	Canola	cytosol	24.33	32.16
PGSC0003DMT400059139	Potato	cytosol	16.02	21.05
CDY44622	Canola	cytosol	25.37	19.79
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	16.47	14.45

Protein Annotations

Gene3D:3.30.70.2280	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787
InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M1D269
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	EnsemblPlantsGene:PGSC0003DMG400031016	PGSC:PGSC0003DMG400031016
EnsemblPlants:PGSC0003DMT400079640	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF237	InterPro:RBD_domain_sf
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF54928	UniParc:UPI000296BEFF	SEG:seg

Description

Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400031016]

Coordinates

chr3:+:41084627..41089884

Molecular Weight (calculated)

73035.4 Da

IEP (calculated)

9.390

GRAVY (calculated)

-0.389

Length

674 amino acids

Sequence
(BLAST)

001: MASEDLMELK KSGNGSSADS HKKSKKTKID SGSDSEEIKK SKKKDKKRKA LSLDDQENGN SEVLEPDEKK KKKKKKKKDE DEAKLVEEDS EEKEEDPNAL
101: SNFRISVPLR EALITKGIHA LFPIQAMTFD TILDGSDLIG RARTGQGKTL AFVLPILESL INGPTKVSRK TGYGRAPSVL VLLPTRELAL QVFADFEFYG
201: GAVGLTSCCL YGNSPMGQQQ VQLKRGVDIV VGTPGRIKDH IERGNIDFRS LKFRVLDEVD EMLKIGFVDD VEFILGKVED ASQVQTLLFS ATLPSWVKHI
301: SSKFLKPDKK TADLVGDEKM KASKSVRHII IPCSSSARSQ LIPDIIRCYS SGGRTIIFTE TRGYASELAG ILPGARALHG EIQQSQREIT LAGFRSGKFL
401: TLVATNVAAR GLDIDNVQLI VQCEPPRDVE AYIHRSGRTG RAGNTGVAVM LYDPKKSNIS KIERESGVKF EHLSAPQPAD VAKAAGKEAA EAIAEISDSV
501: IPAFKAAAEE LLHTSELSPA ELLAKALAKA AGYSEIKSRS LLSSMENCVT LLLECGRPIF SPSFAYNVLR GFLSEEKVES IKGLTLTADG KGAVFDVSAD
601: DLDTFLAGKN AQGVSLEVVK ELPRLQEKDQ SRGGRFGGGR GGFSDRRNGG RFSGGRGGRG GGGGRGYGNL GRRW

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.