Factsheet for PGSC0003DMT400071859

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011164
PGSC0003DMT400011166
PGSC0003DMT400056014
PGSC0003DMT400069100

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	PGSC0003DMT400011164	AT1G53720.1	16497658
AT5G62190.1	PGSC0003DMT400011166	AT1G53720.1	16497658
AT5G62190.1	PGSC0003DMT400056014	AT1G53720.1	16497658
AT5G62190.1	PGSC0003DMT400069100	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g035450.2.1	Tomato	nucleus	57.1	95.26
PGSC0003DMT400079640	Potato	nucleus	79.82	79.23
VIT_16s0022g02110.t01	Wine grape	plastid	69.51	67.0
GSMUA_Achr7P05930_001	Banana	nucleus	60.54	66.72
CDX87236	Canola	nucleus	61.58	64.68
Bra035903.1-P	Field mustard	nucleus	60.69	64.14
CDY16789	Canola	nucleus	60.84	64.09
KRG91400	Soybean	nucleus	66.07	63.78
KRH35418	Soybean	endoplasmic reticulum	66.07	63.41
Bra029275.1-P	Field mustard	nucleus	61.58	62.52
AT5G62190.1	Thale cress	nucleus	61.44	61.25
HORVU5Hr1G080170.2	Barley	nucleus	58.45	60.34
CDY28363	Canola	plastid	24.51	59.85
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	21.97	58.8
GSMUA_Achr4P19590_001	Banana	nucleus	62.78	58.33
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	60.24	57.57
TraesCS5B01G309500.1	Wheat	nucleus	60.09	57.43
TraesCS5A01G308900.1	Wheat	nucleus	59.79	57.22
Zm00001d006160_P001	Maize	nucleus	59.94	56.96
Os09t0520700-01	Rice	nucleus, plastid	58.74	56.47
EER97062	Sorghum	nucleus	59.94	56.4
Zm00001d021196_P004	Maize	nucleus	59.19	56.01
Zm00001d035226_P001	Maize	plasma membrane	19.73	37.93
Zm00001d035797_P001	Maize	mitochondrion	30.04	35.26
Zm00001d049075_P001	Maize	extracellular, golgi	25.41	35.12
Zm00001d046048_P001	Maize	cytosol	9.72	34.57
Zm00001d049254_P001	Maize	cytosol	9.87	34.55
Zm00001d050438_P002	Maize	extracellular	16.29	33.85
PGSC0003DMT400074131	Potato	plastid	25.11	33.73
Zm00001d024138_P001	Maize	plastid	14.05	33.33
CDY34116	Canola	cytosol	24.07	31.57
PGSC0003DMT400059139	Potato	cytosol	16.74	21.83
CDY44622	Canola	cytosol	25.26	19.56
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	17.34	15.1

Protein Annotations

Gene3D:3.30.70.2280	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	InterPro:GUCT
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M1CPF1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	EnsemblPlantsGene:PGSC0003DMG400027958	PGSC:PGSC0003DMG400027958
EnsemblPlants:PGSC0003DMT400071859	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF237
InterPro:RBD_domain_sf	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF54928
UniParc:UPI000296208B	SEG:seg	:	:	:	:

Description

Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400027958]

Coordinates

chr6:+:36434223..36439651

Molecular Weight (calculated)

72462.2 Da

IEP (calculated)

9.338

GRAVY (calculated)

-0.325

Length

669 amino acids

Sequence
(BLAST)

001: MASEVSKRKM KKTPKTDLET PTDKKTKEKK SKKSKIDSGS DSEDAKRSKK KEKKRKALDL DGEKSDTSSE ICEPVDLKKN KKAKLDEEEV MVEKKVEDPN
101: ALSNFRISKP LKEALNSKGI EALFPIQAMT FDDILDGCDL VGRARTGQGK TLAFVLPILE SLTNGPTKAL RKTGYGKAPS VLVLLPTREL ALQVFADFEV
201: YGRAVGLTSC CLYGNSPMGA QQAQLKRGVD IVVGTPGRVK DHIERGNIDF GSLKFRVLDE VDEMLKIGFV DDVEFILGKV EDASLVQTVL FSATLPVWVK
301: HIASKFLKPD KKTADLVGNE KMKASKNVRH IIIPCSSTAR PQLIPDIIRC YGSGGRTIIF TETRALASEL AGLLPGASAL HGEIQQNQRE ATLKGFRSGK
401: FMTLVATNVA ARGLDIDDVQ LIIQCEATSD VEAYIHRSGR TGRAGKSGVA VMLYDPRKSN ISRIEKESGV TFEHLSAPQP ADVAKAAGKE AADIIADISD
501: SVIPAFKDAA EELLNTSDLS PAELLAKALA KAAGYSEIKT RSLLTSMENC VTLLLECGRP IFSPSFVYSV LRRFLPEEKV ESINGLTLTA DGKGAVFDVA
601: AEHLDEFLSG HKTAHGVNLE VVEALPPLQE REKPRSRFGG GGRGGGFGNR RGGGGFSGGR GNGNFGRRW

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.