CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY10512
CDY72459

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	CDY10512	AT1G53720.1	16497658
AT5G62190.1	CDY72459	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34116	Canola	cytosol	71.9	38.63
CDX87236	Canola	nucleus	73.36	31.55
CDY16789	Canola	nucleus	72.99	31.5
Solyc06g035450.2.1	Tomato	nucleus	45.99	31.42
Bra029275.1-P	Field mustard	nucleus	75.55	31.41
GSMUA_Achr7P05930_001	Banana	nucleus	61.31	27.68
AT5G62190.1	Thale cress	nucleus	67.15	27.42
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	23.72	26.0
PGSC0003DMT400079640	Potato	nucleus	62.04	25.22
KRG91400	Soybean	nucleus	63.14	24.96
VIT_16s0022g02110.t01	Wine grape	plastid	63.14	24.93
Solyc03g007010.2.1	Tomato	nucleus	62.04	24.93
KRH35418	Soybean	endoplasmic reticulum	62.41	24.53
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	59.85	24.51
HORVU5Hr1G080170.2	Barley	nucleus	56.57	23.92
CDY44622	Canola	cytosol	74.09	23.5
GSMUA_Achr4P19590_001	Banana	nucleus	58.76	22.36
TraesCS5A01G308900.1	Wheat	nucleus	56.2	22.03
Zm00001d006160_P001	Maize	nucleus	56.57	22.02
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	56.2	22.0
TraesCS5B01G309500.1	Wheat	nucleus	56.2	22.0
Os09t0520700-01	Rice	nucleus, plastid	54.74	21.55
Zm00001d021196_P004	Maize	nucleus	55.47	21.5
EER97062	Sorghum	nucleus	55.11	21.24
Zm00001d035226_P001	Maize	plasma membrane	23.36	18.39
Zm00001d050438_P002	Maize	extracellular	20.8	17.7
CDY46329	Canola	mitochondrion	34.67	17.3
CDY37406	Canola	mitochondrion	31.75	17.06
Zm00001d035797_P001	Maize	mitochondrion	35.4	17.02
CDY46330	Canola	nucleus	17.52	16.44
Zm00001d049075_P001	Maize	extracellular, golgi	27.37	15.5
CDY37408	Canola	mitochondrion	32.85	14.97
CDY10634	Canola	mitochondrion	32.85	14.95
Zm00001d024138_P001	Maize	plastid	15.33	14.89
CDX80564	Canola	plastid	36.86	13.87
CDY66725	Canola	plastid	37.23	13.73
CDY05524	Canola	plastid	36.86	13.69
CDX87045	Canola	plastid	36.86	13.54
CDY61108	Canola	plastid	36.86	13.47
CDY19766	Canola	plastid	36.86	13.27
CDY44172	Canola	cytosol	21.9	11.3
CDY22890	Canola	cytosol	21.53	11.11
Zm00001d049254_P001	Maize	cytosol	6.93	9.95
Zm00001d046048_P001	Maize	cytosol	6.57	9.57

Protein Annotations

EnsemblPlants:CDY28363	EnsemblPlantsGene:GSBRNA2T00040160001	Gene3D:3.40.50.300	GO:A0A078GUP5	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:Helicase_ATP-bd	InterPro:IPR014001
InterPro:P-loop_NTPase	PANTHER:PTHR24031	PANTHER:PTHR24031:SF346	PFAM:PF00270	PFscan:PS51192	ProteinID:CDY28363
ProteinID:CDY28363.1	SUPFAM:SSF52540	UniParc:UPI0004EED982	UniProt:A0A078GUP5	MapMan:35.1	:

Description

BnaC01g35330DBnaC01g35330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUP5]

Coordinates

chrLK032218:-:281393..284210

Molecular Weight (calculated)

30152.9 Da

IEP (calculated)

10.704

GRAVY (calculated)

-0.367

Length

274 amino acids

Sequence
(BLAST)

001: MILGGADLVG RARTGQGKKL VLVLPILKSL INGPAKRKNK NRYGRPHSVL ILLPTRELAK QVFADFDAYE GFVALNSCCV YEGSQKIKLK RGADIIVGTP
101: GRIKDHTERH NIATRFLKQD KKTIDLVGND KIKASNSVRP IALPCNKQSM SRLIPYTISL YSSGGSKICF TKTKDQASQF SGLLPGARAL HGDIQQSQRK
201: ITLVGFRKGQ TGVAIMLYGS RKSGLSSIEK QTGKRFEHVS APQPNDIAKA VGMEAAEKII QVYEYDIWNG KEKK

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.