Factsheet for Zm00001d049075_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, golgi

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d036620_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	Zm00001d036620_P001	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035226_P001	Maize	plasma membrane	56.41	78.45
Zm00001d049254_P001	Maize	cytosol	28.72	72.77
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	36.16	70.0
Zm00001d046048_P001	Maize	cytosol	24.38	62.77
Zm00001d035797_P001	Maize	mitochondrion	66.53	56.49
Zm00001d050438_P002	Maize	extracellular	28.72	43.17
Zm00001d024138_P001	Maize	plastid	22.93	39.36
GSMUA_Achr7P05930_001	Banana	nucleus	41.53	33.11
Zm00001d021196_P004	Maize	nucleus	48.35	33.1
Zm00001d006160_P001	Maize	nucleus	48.14	33.1
EER97062	Sorghum	nucleus	48.14	32.77
HORVU5Hr1G080170.2	Barley	nucleus	42.98	32.1
Zm00001d032793_P001	Maize	cytosol	4.13	31.75
TraesCS5A01G308900.1	Wheat	nucleus	43.39	30.04
Os09t0520700-01	Rice	nucleus, plastid	43.18	30.03
TraesCS5B01G309500.1	Wheat	nucleus	43.39	30.0
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	43.39	30.0
CDY28363	Canola	plastid	15.5	27.37
PGSC0003DMT400079640	Potato	nucleus	37.4	26.85
GSMUA_Achr4P19590_001	Banana	nucleus	39.88	26.81
Solyc03g007010.2.1	Tomato	nucleus	36.57	25.95
Bra029275.1-P	Field mustard	nucleus	35.33	25.95
KRG91400	Soybean	nucleus	36.98	25.83
AT5G62190.1	Thale cress	nucleus	35.74	25.78
VIT_16s0022g02110.t01	Wine grape	plastid	36.78	25.65
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	35.12	25.41
KRH35418	Soybean	endoplasmic reticulum	36.36	25.25
Zm00001d008884_P001	Maize	cytosol	8.88	25.0
CDX87236	Canola	nucleus	32.23	24.49
CDY16789	Canola	nucleus	31.41	23.94
Bra035903.1-P	Field mustard	nucleus	30.99	23.7
Solyc06g035450.2.1	Tomato	nucleus	19.63	23.69
Zm00001d030797_P001	Maize	mitochondrion	9.5	22.12
Zm00001d048578_P001	Maize	cytosol	9.5	19.66
Zm00001d031584_P001	Maize	cytosol	6.61	15.53
CDY34116	Canola	cytosol	16.32	15.49
Zm00001d033226_P001	Maize	cytosol	3.93	15.2
Zm00001d043739_P001	Maize	mitochondrion	6.2	14.42
Zm00001d012922_P003	Maize	plastid	19.63	12.75
Zm00001d034721_P002	Maize	plastid	19.42	12.4
Zm00001d031050_P002	Maize	mitochondrion	15.5	12.28
Zm00001d041480_P001	Maize	mitochondrion	15.08	12.19
Zm00001d018787_P001	Maize	mitochondrion	14.05	11.17
CDY44622	Canola	cytosol	15.7	8.8
Zm00001d018375_P001	Maize	nucleus	8.26	7.65
Zm00001d052036_P001	Maize	plastid	2.89	6.67

Protein Annotations

Gene3D:2.160.10.10	Gene3D:2.30.30.30	MapMan:3.1.2.6	Gene3D:3.40.50.300	UniProt:A0A1D6PS30	ProteinID:AQK49524.1
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016787	GO:GO:0070569	InterPro:Helicase_ATP-bd	InterPro:IPR014001
InterPro:IPR014722	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF01704	ScanProsite:PS00039	PFscan:PS51192
PANTHER:PTHR43511	PANTHER:PTHR43511:SF1	InterPro:RNA-helicase_DEAD-box_CS	InterPro:Rib_L2_dom2	SUPFAM:SSF51161	SUPFAM:SSF52540
TMHMM:TMhelix	InterPro:Trimer_LpxA-like_sf	InterPro:UDPGP_fam	UniParc:UPI0008432005	EnsemblPlantsGene:Zm00001d049075	EnsemblPlants:Zm00001d049075_P001
EnsemblPlants:Zm00001d049075_T001	SEG:seg	:	:	:	:

Description

Putative DEAD-box ATP-dependent RNA helicase family protein

Coordinates

chr4:+:14903946..14908170

Molecular Weight (calculated)

53841.2 Da

IEP (calculated)

8.797

GRAVY (calculated)

0.277

Length

484 amino acids

Sequence
(BLAST)

001: MSTKKVAITR ILVAQLYGNI FRSCFLPVKA TLDLQLVQSD LYTLVDGFVT RNSARTNPSN PSIELGPEFK KVGSFLGRFK SIPSIVELDS LKVSSDVWFG
101: SGIVLKVHLP KCTLTLSFMV QHLGSLHVVC MGITLSSSRN GIEKRCGYCC WNSWSCQGVC LIFASPAHCI MCSFLRFLMY ATSLVQDFIV KGTLNLKCLK
201: FRVLDEADEM LNMGFVDDVE LILGMLICKV EDATKVQTLL FSATLPDWVN KHSMRFLKVD RKTVDLVGNE KLKASASVKH LALPCNKAAR AQVIPDIIRC
301: YSQDVLPHRW LFFSNTGVAV MLYEPRYKHS VSRLERESGV KFEHISAPQP TDVAQSAGSE AADAIASVSD SVIPIFRQQA EQLLSSSSLS AADLLAKALA
401: KAVVCYNIPV ILFLHRRGHI CSHWCYLQFD VGNVVMVTGG RNTGRVGVIK NWEKHKGIFE VIDVLLGVFC MLCLVFSYLL YRKT

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.