Factsheet for Zm00001d006160_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d036620_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	Zm00001d036620_P001	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97062	Sorghum	nucleus	95.74	94.8
Zm00001d021196_P004	Maize	nucleus	94.46	94.06
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	29.26	82.4
HORVU5Hr1G080170.2	Barley	nucleus	73.72	80.09
Os09t0520700-01	Rice	nucleus, plastid	78.55	79.45
TraesCS5B01G309500.1	Wheat	nucleus	78.98	79.43
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	78.84	79.29
TraesCS5A01G308900.1	Wheat	nucleus	78.55	79.11
GSMUA_Achr7P05930_001	Banana	nucleus	64.06	74.3
GSMUA_Achr4P19590_001	Banana	nucleus	67.19	65.69
KRG91400	Soybean	nucleus	60.8	61.76
PGSC0003DMT400079640	Potato	nucleus	58.95	61.57
CDY16789	Canola	nucleus	55.4	61.42
CDX87236	Canola	nucleus	55.54	61.38
Bra035903.1-P	Field mustard	nucleus	54.97	61.14
Solyc03g007010.2.1	Tomato	nucleus	58.81	60.7
KRH35418	Soybean	endoplasmic reticulum	60.09	60.69
VIT_16s0022g02110.t01	Wine grape	plastid	59.38	60.23
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	56.96	59.94
Bra029275.1-P	Field mustard	nucleus	56.11	59.94
AT5G62190.1	Thale cress	nucleus	56.96	59.76
Solyc06g035450.2.1	Tomato	nucleus	33.52	58.85
CDY28363	Canola	plastid	22.02	56.57
Zm00001d035226_P001	Maize	plasma membrane	26.14	52.87
Zm00001d035797_P001	Maize	mitochondrion	39.63	48.95
Zm00001d008884_P001	Maize	cytosol	11.79	48.26
Zm00001d049075_P001	Maize	extracellular, golgi	33.1	48.14
Zm00001d050438_P002	Maize	extracellular	21.45	46.89
Zm00001d049254_P001	Maize	cytosol	12.64	46.6
Zm00001d046048_P001	Maize	cytosol	12.22	45.74
Zm00001d024138_P001	Maize	plastid	16.9	42.2
Zm00001d030797_P001	Maize	mitochondrion	12.07	40.87
Zm00001d033226_P001	Maize	cytosol	6.82	38.4
Zm00001d048578_P001	Maize	cytosol	12.5	37.61
Zm00001d032793_P001	Maize	cytosol	3.27	36.51
Zm00001d012922_P003	Maize	plastid	33.95	32.08
Zm00001d034721_P002	Maize	plastid	34.09	31.66
Zm00001d031050_P002	Maize	mitochondrion	27.13	31.26
Zm00001d041480_P001	Maize	mitochondrion	26.28	30.88
Zm00001d018787_P001	Maize	mitochondrion	25.28	29.23
CDY34116	Canola	cytosol	21.16	29.22
Zm00001d043739_P001	Maize	mitochondrion	7.95	26.92
Zm00001d031584_P001	Maize	cytosol	7.67	26.21
Zm00001d018375_P001	Maize	nucleus	15.48	20.84
CDY44622	Canola	cytosol	22.3	18.17
Zm00001d052036_P001	Maize	plastid	3.98	13.33

Protein Annotations

EntrezGene:100193061	Gene3D:3.30.70.2280	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6ET96	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0016787	InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	ProteinID:ONM22933.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF08152	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF237	InterPro:RBD_domain_sf	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	SUPFAM:SSF54928	UniParc:UPI00022109E6	EnsemblPlantsGene:Zm00001d006160	EnsemblPlants:Zm00001d006160_P001	EnsemblPlants:Zm00001d006160_T001
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 7

Coordinates

chr2:+:200081380..200085878

Molecular Weight (calculated)

75131.4 Da

IEP (calculated)

9.662

GRAVY (calculated)

-0.350

Length

704 amino acids

Sequence
(BLAST)

001: MSPALAAAVE PMAVDDSASK KAKRKQLKAA AAAAAAEAEE EAASAKKKEK KEKKRKAKEP SPPLPSAASS GEEKSSTSSE ETAPTAKKAK KDKTKKNVEV
101: SSSASDDDGE ITAGSDEDPA DPNALTNFRI SEPLRQSLRS KGIKALFPIQ ATTFDLVLDG SDLVGRARTG QGKTLAFVLP ILESLVNGAN KASRRTEHGR
201: TPSVLVLLPT RELANQVHAD FEFYGATFGL SACCVYGGSP YRPQEMALRR GVDIVVGTPG RIKDFIVKGT LNLKCLKFRV LDEADEMLNM GFVDDVELIL
301: GKVEDATKVQ TLLFSATLPD WVNKLSMRFL KVDRKTVDLV GNEKLKASAS VKHLALPCNK AARAQLIPDI IRCYSHGGRT IIFTETKDSA SELSGLIPGS
401: RALHGDVVQA QREVILAGFR SGKFQVLVAT NVAARGLDIN DVQLIIQCEP PRDVEAYIHR SGRTGRAGNT GVAVMLYEPR YKYSVSRLER ESGVKFEHIS
501: APQPTDVAQS AGSEAADAIA SVSDSVIPVF RQQAEQLLSS STLSAADLLA KALAKAVGYT DIKKRSLLSS MEDYATLHLQ TGRQMWSPGF AFTILKRFMP
601: EEKLADVKGA TLTADGTGVV FDVPAADVED YIQASENAAQ VTIDEVQQLP PLQEKQQQQS RGNSGGGRFG RGGGGRFSGG GRGGGFGGGG RGRGGGGGRG
701: RRRQ

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.